RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.817_1
         (148 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 34.9 bits (80), Expect = 0.008
 Identities = 23/151 (15%), Positives = 44/151 (29%), Gaps = 42/151 (27%)

Query: 21  HHNRLRDRF---LQKGENALAYYE----ILEL-------ILFRLIP--RKDTKSIAKALL 64
             ++L+++F   L +     A  +      EL       +   + P        +    L
Sbjct: 29  IASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL 88

Query: 65  KRFAT--LGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANW-----SIKKFLT 117
             F    L G          +I+ +  ++  E     V ++ ++K        + + F  
Sbjct: 89  TEFENCYLEG---------NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139

Query: 118 PGQPCLISVERHYPMKNANNFAYCFSINIIF 148
                L    R     NA   A       IF
Sbjct: 140 KSNSALF---RAVGEGNAQLVA-------IF 160



 Score = 25.3 bits (55), Expect = 6.2
 Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 41/131 (31%)

Query: 1    LEDFRMSKA--PSKDSHLDYIGHHNRLRDRFLQKGENA--------LAYYEILELILFR- 49
             ED + SK   P+  +   + GH           GE A        ++   ++E++ +R 
Sbjct: 1744 FEDLK-SKGLIPADAT---FAGH---------SLGEYAALASLADVMSIESLVEVVFYRG 1790

Query: 50   -----LIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQE-----INRIGKRVALELKLV- 98
                  +PR +   + ++     A   G   A     QE     + R+GKR    +++V 
Sbjct: 1791 MTMQVAVPRDE---LGRSNYGMIAINPGRVAASFS--QEALQYVVERVGKRTGWLVEIVN 1845

Query: 99   -SVASQRILKA 108
             +V +Q+ + A
Sbjct: 1846 YNVENQQYVAA 1856


>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH
          domain, DNA-binding domain, DNA binding protein; NMR
          {Escherichia coli} SCOP: a.60.2.3
          Length = 78

 Score = 31.3 bits (71), Expect = 0.092
 Identities = 8/37 (21%), Positives = 18/37 (48%)

Query: 60 AKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELK 96
           + LLK    L G+  A +  + ++  I + +A ++ 
Sbjct: 37 RQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 73


>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease,
           nucleotide excision repair; 2.8A {Aeropyrum pernix}
           SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
          Length = 219

 Score = 28.0 bits (61), Expect = 0.80
 Identities = 12/41 (29%), Positives = 23/41 (56%)

Query: 56  TKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELK 96
            +  A+ +L+RF +L   F A    + ++  IG++ A E+K
Sbjct: 171 GRRTAERILERFGSLERFFTASKAEISKVEGIGEKRAEEIK 211


>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair,
           DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A
           {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
          Length = 377

 Score = 27.8 bits (62), Expect = 0.96
 Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 51  IPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELK--LVSVASQRILK 107
           + R    SI   +++ F TL  +  A +  L+++  IG++ A  +   + S+  ++  +
Sbjct: 320 VARI-PLSIGYNVVRMFKTLDQISKASVEDLKKVEGIGEKRARAISESISSLKHRKTSE 377


>1gqi_A Alpha-glucuronidase; (alpha-beta)8 barrel, glycoside hydrolase;
           1.48A {Pseudomonas cellulosa} SCOP: c.1.8.10 d.92.2.2
           PDB: 1gqj_A* 1gqk_A* 1gql_A* 1h41_A*
          Length = 708

 Score = 26.9 bits (59), Expect = 2.1
 Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 50  LIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRIL 106
           L+ +         ++   + +G ++G+  HLL+ I        L L        R++
Sbjct: 98  LLEQTRINKRHVVIVAANSDVGVLYGS-FHLLRLIQTQHALEKLSLSSAPRLQHRVV 153


>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision
           repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA
           excision; 1.90A {Bacillus stearothermophilus}
          Length = 226

 Score = 26.3 bits (57), Expect = 2.5
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 56  TKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELK 96
            +   KALL  F ++  +  A +  LQ  N I + VA ++ 
Sbjct: 182 GEKRKKALLNYFGSVKKMKEATVEELQRAN-IPRAVAEKIY 221


>1vpy_A Protein (hypothetical protein EF0366); structural genomics, joint
           center for structural genomics, JCSG, protein structure
           initiative; 2.52A {Enterococcus faecalis V583} SCOP:
           c.1.32.1 PDB: 1ztv_A
          Length = 289

 Score = 26.1 bits (57), Expect = 2.8
 Identities = 12/79 (15%), Positives = 21/79 (26%), Gaps = 16/79 (20%)

Query: 2   EDFRMS-KAPSKDSHLDYIGHHNRLRDRFLQKGENALAYYEILE---------LILFRLI 51
           E+FR   K  S       I      +  +  + E   A+ E +            L +  
Sbjct: 69  ENFRFVMKVYS------GISCQGEWQTYYASEEEMITAFLESMAPLIESKKLFAFLVQFS 122

Query: 52  PRKDTKSIAKALLKRFATL 70
                     A L++    
Sbjct: 123 GTFGCTKENVAYLQKIRHW 141


>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative
           II(PSI II), NYSGXRC, structural genomics; 1.79A
           {Cytophaga hutchinsonii atcc 33406}
          Length = 634

 Score = 26.0 bits (56), Expect = 3.2
 Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 27  DRFLQKGENALAYYEILELILFRLI-PRKDTKSIAKALLKRFA 68
             + Q  E  L  Y++L  I  + I  R     +  ALL    
Sbjct: 522 SEYTQTDERDLMPYDVLARIERKAIKERLSPVQVYTALLTEGP 564


>1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate
           inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa}
           SCOP: c.69.1.18
          Length = 285

 Score = 26.3 bits (57), Expect = 3.2
 Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 3/27 (11%)

Query: 14  SHLDYIGHHNRLRDRFLQKGENALAYY 40
           +HLD +     L   F     + ++ Y
Sbjct: 250 NHLDEVNQVFGLTSLF---ETSPVSVY 273


>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix,
          hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
          Length = 89

 Score = 25.7 bits (56), Expect = 4.3
 Identities = 10/40 (25%), Positives = 17/40 (42%)

Query: 57 KSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELK 96
          K+ ++ LL  F +L  +  A    L     +G + A  L 
Sbjct: 29 KTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLF 68


>3dla_A Glutamine-dependent NAD(+) synthetase; glutaminase, ammonia
           tunneling, enzyme, glutamine-amido transferase,
           ATP-binding, ligase; HET: NXX ONL; 2.35A {Mycobacterium
           tuberculosis}
          Length = 680

 Score = 25.3 bits (54), Expect = 5.9
 Identities = 7/40 (17%), Positives = 15/40 (37%)

Query: 27  DRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKR 66
           +  LQ  E  +  + + +  LF+++      S    L   
Sbjct: 552 EEELQSSEAKVGPFALQDFSLFQVLRYGFRPSKIAFLAWH 591


>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA
          binding domain, homodimer, hydrolase; 1.45A {Pyrococcus
          furiosus} SCOP: a.60.2.5
          Length = 75

 Score = 25.2 bits (55), Expect = 6.4
 Identities = 13/40 (32%), Positives = 26/40 (65%)

Query: 57 KSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELK 96
           ++A+ LLK F ++  VF A +  L ++  IG+++A E++
Sbjct: 24 ATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIR 63


>2hih_A Lipase 46 kDa form; A1 phospholipase, phospholipid binding,
           hydrolase; 2.86A {Staphylococcus hyicus}
          Length = 431

 Score = 25.1 bits (54), Expect = 6.5
 Identities = 5/27 (18%), Positives = 8/27 (29%), Gaps = 3/27 (11%)

Query: 14  SHLDYIGHHNRLRDRFLQKGENALAYY 40
            H D+IG+                 +Y
Sbjct: 389 DHSDFIGNDALDTKHS---AIELTNFY 412


>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
           protein structure initiative, P nysgrc; 2.35A
           {Streptomyces avermitilis}
          Length = 590

 Score = 25.1 bits (54), Expect = 7.0
 Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 6/46 (13%)

Query: 31  QKGENALAYYEILELILFRLIPRKDTKS------IAKALLKRFATL 70
           Q   ++L  Y +L+ IL   + R             + L+ +   +
Sbjct: 502 QVDTDSLPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRM 547


>3iyd_D DNA-directed RNA polymerase subunit beta; transcription,
           initiation, class I, activator, RNA polymerase,
           holoenzyme, sigma70, open complex, CAP, CRP,
           CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli
           k-12}
          Length = 1413

 Score = 24.4 bits (52), Expect = 9.4
 Identities = 7/42 (16%), Positives = 16/42 (38%)

Query: 103 QRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSI 144
           +R++  N  +K+ L    P +I       ++ A +       
Sbjct: 270 RRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGR 311


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.326    0.141    0.417 

Gapped
Lambda     K      H
   0.267   0.0507    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,264,363
Number of extensions: 53927
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 20
Length of query: 148
Length of database: 5,693,230
Length adjustment: 84
Effective length of query: 64
Effective length of database: 3,656,734
Effective search space: 234030976
Effective search space used: 234030976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.3 bits)