Query 537021.9.peg.818_1 Match_columns 44 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 00:43:32 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_818.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3f3f_C Nucleoporin NUP85; str 18.0 30 0.00089 17.6 0.0 19 23-41 54-75 (76) 2 >2jso_A Polymyxin resistance p 16.9 35 0.001 17.3 0.1 23 5-27 38-60 (88) 3 >1tf6_A Protein (transcription 9.0 1.4E+02 0.0043 14.3 1.3 24 14-37 9-32 (32) 4 >2w42_A PIWI, putative unchara 6.7 1.8E+02 0.0053 13.9 0.9 27 17-43 19-45 (51) 5 >3ig3_A Plxna3 protein; plexin 6.7 1.6E+02 0.0047 14.1 0.6 20 12-31 69-88 (122) 6 >1hbn_A Methyl-coenzyme M redu 4.8 2E+02 0.0058 13.7 0.2 23 6-28 77-100 (192) 7 >2vxe_A CG10686-PA; EDC3, CAR- 4.5 3.3E+02 0.0097 12.6 1.1 12 4-15 67-78 (88) 8 >3fvq_A Fe(3+) IONS import ATP 4.5 1.8E+02 0.0053 13.9 -0.2 11 31-41 15-25 (44) 9 >3dad_A FH1/FH2 domain-contain 4.1 2E+02 0.0059 13.7 -0.3 18 12-29 66-83 (115) 10 >1i9w_A Fusion protein E1; env 3.9 2.5E+02 0.0075 13.1 0.2 8 32-39 155-162 (174) No 1 >>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleoporin complex, nuclear pore complex, macromolecular assembly; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B (C:495-570) Probab=18.03 E-value=30 Score=17.59 Aligned_cols=19 Identities=26% Similarity=0.609 Sum_probs=15.4 Q ss_pred ECCCHHHHHHHH---CCCCEEE Q ss_conf 243067765410---5860231 Q 537021.9.peg.8 23 LNGNLLKGLCSF---GNLPIVK 41 (44) Q Consensus 23 lngnllkglcsf---gnlpivk 41 (44) -+||++.+||-| |+.++|| T Consensus 54 ~~g~~~Eal~nFskaG~~~~vk 75 (76) T 3f3f_C 54 SAHNIIESIANFSRAGKYELVK 75 (76) T ss_dssp ---------------------- T ss_pred HCCCHHHHHHHHHHCCCHHHCC T ss_conf 7787999999999758844016 No 2 >>2jso_A Polymyxin resistance protein PMRD; antibiotic resistance, transcription, signaling protein; NMR {Escherichia coli K12} (A:) Probab=16.92 E-value=35 Score=17.27 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=18.4 Q ss_pred EEEECCCCCCCCCCCEEEECCCH Q ss_conf 99860774332223101224306 Q 537021.9.peg.8 5 FLLFEGSDLADDCDAQYSLNGNL 27 (44) Q Consensus 5 fllfegsdladdcdaqyslngnl 27 (44) +.+++|.-|..--||||-+|.|- T Consensus 38 ~~l~~gD~LsPLkdA~YciNr~~ 60 (88) T 2jso_A 38 FAVKVGDLLSPLQNALYCINREK 60 (88) T ss_dssp SCCCTTCEECBSSSSEEEEBTEE T ss_pred CCCCCCCCCCCCHHHHHHHCCCC T ss_conf 46576541460123067653798 No 3 >>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} (A:69-100) Probab=8.97 E-value=1.4e+02 Score=14.31 Aligned_cols=24 Identities=29% Similarity=0.660 Sum_probs=20.4 Q ss_pred CCCCCCEEEECCCHHHHHHHHCCC Q ss_conf 322231012243067765410586 Q 537021.9.peg.8 14 ADDCDAQYSLNGNLLKGLCSFGNL 37 (44) Q Consensus 14 addcdaqyslngnllkglcsfgnl 37 (44) .|.||-.+.-..|.-|-.-.|-|+ T Consensus 9 sd~cdl~fttkanmkkhfnrfhn~ 32 (32) T 1tf6_A 9 SDGCDLRFTTKANMKKHFNRFHNI 32 (32) T ss_dssp SSSCCCEESCHHHHHHHHHTTSST T ss_pred CCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 356532212111222232211112 No 4 >>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A (A:1-41,A:167-176) Probab=6.71 E-value=1.8e+02 Score=13.86 Aligned_cols=27 Identities=30% Similarity=0.561 Sum_probs=19.0 Q ss_pred CCCEEEECCCHHHHHHHHCCCCEEEEE Q ss_conf 231012243067765410586023141 Q 537021.9.peg.8 17 CDAQYSLNGNLLKGLCSFGNLPIVKFI 43 (44) Q Consensus 17 cdaqyslngnllkglcsfgnlpivkfi 43 (44) .....|-.|.|.|||-.+|...+-.+| T Consensus 19 asvpisntgelikglrnygpyevkpwi 45 (51) T 2w42_A 19 ASVPISNTGELIKGLRNYGPYEVKPWI 45 (51) T ss_dssp CEEESSCHHHHHHHHHHHCCSBCBCCE T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCEE T ss_conf 700454302777667664996466245 No 5 >>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembrane, membrane protein, signaling protein; 1.99A {Mus musculus} (A:1-48,A:188-224,A:398-434) Probab=6.70 E-value=1.6e+02 Score=14.13 Aligned_cols=20 Identities=35% Similarity=0.292 Sum_probs=14.8 Q ss_pred CCCCCCCCEEEECCCHHHHH Q ss_conf 43322231012243067765 Q 537021.9.peg.8 12 DLADDCDAQYSLNGNLLKGL 31 (44) Q Consensus 12 dladdcdaqyslngnllkgl 31 (44) -=|-.++|.||||.+-|++- T Consensus 69 vDaiTg~A~ysL~ed~Le~e 88 (122) T 3ig3_A 69 IDAITGEARYSLSEDKLEGD 88 (122) T ss_dssp BCTTTCCBTTCSSGGGB--- T ss_pred HHHHCCCEEEEECHHHHCCC T ss_conf 23222320352167665663 No 6 >>1hbn_A Methyl-coenzyme M reductase I alpha subunit; methanogenesis, biological methanogenesis, NI-enzyme, oxidoreductase; HET: MHS AGM MGN F43 TP7; 1.16A {Methanothermobacterthermautotrophicus} (A:87-278) Probab=4.81 E-value=2e+02 Score=13.67 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=17.3 Q ss_pred EEECCC-CCCCCCCCEEEECCCHH Q ss_conf 986077-43322231012243067 Q 537021.9.peg.8 6 LLFEGS-DLADDCDAQYSLNGNLL 28 (44) Q Consensus 6 llfegs-dladdcdaqyslngnll 28 (44) -.|.|. +|||+-|.||-++-|-+ T Consensus 77 kiftGddeladeid~~~~idink~ 100 (192) T 1hbn_A 77 KVFTGNDEIADEIDPAFVIDINKQ 100 (192) T ss_dssp EEEESCHHHHHHSCGGGBCCHHHH T ss_pred EEEECCCHHHHCCCCCEEEECCCC T ss_conf 885077034210586169872112 No 7 >>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster} (A:) Probab=4.54 E-value=3.3e+02 Score=12.61 Aligned_cols=12 Identities=50% Similarity=1.118 Sum_probs=8.6 Q ss_pred EEEEECCCCCCC Q ss_conf 799860774332 Q 537021.9.peg.8 4 HFLLFEGSDLAD 15 (44) Q Consensus 4 hfllfegsdlad 15 (44) .+..|.|||..| T Consensus 67 ~~IvFrGsDIKD 78 (88) T 2vxe_A 67 DYILFRGSDIKD 78 (88) T ss_dssp EEEEEETTTEEE T ss_pred EEEEECCCCCCE T ss_conf 689996756417 No 8 >>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} (A:242-285) Probab=4.51 E-value=1.8e+02 Score=13.86 Aligned_cols=11 Identities=36% Similarity=0.893 Sum_probs=7.5 Q ss_pred HHHHCCCCEEE Q ss_conf 54105860231 Q 537021.9.peg.8 31 LCSFGNLPIVK 41 (44) Q Consensus 31 lcsfgnlpivk 41 (44) -|..||+|+.. T Consensus 15 ~cqLG~ipv~~ 25 (44) T 3fvq_A 15 DCRLGRLPVQS 25 (44) T ss_dssp EETTEEEEEEC T ss_pred EEECCCEECCC T ss_conf 86405166357 No 9 >>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} (A:1-115) Probab=4.07 E-value=2e+02 Score=13.65 Aligned_cols=18 Identities=28% Similarity=0.202 Sum_probs=13.6 Q ss_pred CCCCCCCCEEEECCCHHH Q ss_conf 433222310122430677 Q 537021.9.peg.8 12 DLADDCDAQYSLNGNLLK 29 (44) Q Consensus 12 dladdcdaqyslngnllk 29 (44) --.+||.-|.|-||+.|. T Consensus 66 ~kl~D~aLQls~~G~YLD 83 (115) T 3dad_A 66 LKLEDSALQVSPSGYYLD 83 (115) T ss_dssp SCSSSEEEEETTTCCBCC T ss_pred CCHHHHHHHCCCCCCCCC T ss_conf 766776441267875047 No 10 >>1i9w_A Fusion protein E1; envelope glycoprotein, membrane fusion, viral protein; 3.00A {Semliki forest virus} (A:1-50,A:115-194,A:247-290) Probab=3.94 E-value=2.5e+02 Score=13.14 Aligned_cols=8 Identities=50% Similarity=1.522 Sum_probs=0.0 Q ss_pred HHHCCCCE Q ss_conf 41058602 Q 537021.9.peg.8 32 CSFGNLPI 39 (44) Q Consensus 32 csfgnlpi 39 (44) |..||+|| T Consensus 155 ca~g~ipi 162 (174) T 1i9w_A 155 CAVGNIPV 162 (174) T ss_pred CCCCCEEE T ss_conf 30144321 Done!