Query 537021.9.peg.818_1
Match_columns 44
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed May 25 01:34:52 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_818.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jso_A Polymyxin resistance pr 18.2 22 0.00092 17.5 0.1 24 5-28 38-61 (88)
2 1ufw_A Synaptojanin 2; RNP dom 17.4 56 0.0024 15.6 2.0 23 22-44 36-58 (95)
3 3ffm_A Growth arrest and DNA-d 10.9 73 0.0031 15.0 1.1 30 13-42 70-103 (167)
4 1qi9_A Protein (vanadium bromo 9.8 53 0.0022 15.7 0.1 34 2-35 518-551 (556)
5 3cg6_A Growth arrest and DNA-d 8.8 95 0.004 14.4 1.1 30 13-42 49-82 (146)
6 2dnr_A Synaptojanin-1; RRM dom 8.3 1.4E+02 0.0057 13.7 1.7 23 22-44 27-49 (91)
7 2kg4_A Growth arrest and DNA-d 7.7 1E+02 0.0043 14.3 0.8 30 13-42 59-92 (165)
8 1oc7_A Cllulase, CEL6A, cellob 5.3 2.1E+02 0.0089 12.8 2.0 13 32-44 126-138 (364)
9 2zkr_6 60S ribosomal protein L 4.9 2.2E+02 0.0095 12.6 1.8 28 13-43 48-75 (115)
10 3cpq_A 50S ribosomal protein L 4.3 2.3E+02 0.0098 12.6 1.1 27 13-42 43-69 (110)
No 1
>2jso_A Polymyxin resistance protein PMRD; antibiotic resistance, transcription, signaling protein; NMR {Escherichia coli K12}
Probab=18.22 E-value=22 Score=17.51 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=19.0
Q ss_pred EEEECCCCCCCCCCCEEEECCCHH
Q ss_conf 998607743322231012243067
Q 537021.9.peg.8 5 FLLFEGSDLADDCDAQYSLNGNLL 28 (44)
Q Consensus 5 fllfegsdladdcdaqyslngnll 28 (44)
+.+++|.-|..--||||-+|.|-.
T Consensus 38 ~~l~~gD~LsPL~dA~YciNrn~~ 61 (88)
T 2jso_A 38 FAVKVGDLLSPLQNALYCINREKL 61 (88)
T ss_dssp SCCCTTCEECBSSSSEEEEBTEEE
T ss_pred CCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 465765403601230676537988
No 2
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=17.38 E-value=56 Score=15.56 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=19.4
Q ss_pred EECCCHHHHHHHHCCCCEEEEEC
Q ss_conf 22430677654105860231419
Q 537021.9.peg.8 22 SLNGNLLKGLCSFGNLPIVKFIE 44 (44)
Q Consensus 22 slngnllkglcsfgnlpivkfie 44 (44)
++--.||+.+-+||+.-.|+|++
T Consensus 36 ~l~~eLLq~l~~~GeViLVRfv~ 58 (95)
T 1ufw_A 36 DLRTELMQTLGSYGTIVLVRINQ 58 (95)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEET
T ss_pred HHHHHHHHHHHHCCEEEEEEEEC
T ss_conf 99999999864166399999948
No 3
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma; beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Probab=10.90 E-value=73 Score=15.00 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=22.2
Q ss_pred CCCCCCCEE----EECCCHHHHHHHHCCCCEEEE
Q ss_conf 332223101----224306776541058602314
Q 537021.9.peg.8 13 LADDCDAQY----SLNGNLLKGLCSFGNLPIVKF 42 (44)
Q Consensus 13 laddcdaqy----slngnllkglcsfgnlpivkf 42 (44)
||.|||-.- ...-.|++.+|.=.+.||+|.
T Consensus 70 LA~~cde~~dialqmy~kLieAlC~E~~I~likV 103 (167)
T 3ffm_A 70 LAAGEEDEGDIALQIHFTLIQAFCCENDIDIVRV 103 (167)
T ss_dssp EECCGGGTTCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 6368886202578899999999985169876983
No 4
>1qi9_A Protein (vanadium bromoperoxidase); haloperoxidase, oxidoreductase; 2.05A {Ascophyllum nodosum} SCOP: a.111.1.2
Probab=9.82 E-value=53 Score=15.66 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=28.1
Q ss_pred CEEEEEECCCCCCCCCCCEEEECCCHHHHHHHHC
Q ss_conf 7179986077433222310122430677654105
Q 537021.9.peg.8 2 PMHFLLFEGSDLADDCDAQYSLNGNLLKGLCSFG 35 (44)
Q Consensus 2 pmhfllfegsdladdcdaqyslngnllkglcsfg 35 (44)
.+.|-+|.|.-+...-++.|+++|.|..|..+-|
T Consensus 518 ~~~~~~fDG~~v~i~~~~t~~~dG~~~~g~~~~~ 551 (556)
T 1qi9_A 518 TFEFRLFTGEVIKLFQDGTFTIDGFKCPGLVYTG 551 (556)
T ss_dssp EEEEECTTSCEEEEETTSCEEETTEECSSSSCCC
T ss_pred CCEEEECCCCEEEEECCCCEEECCCCCCCCCCCC
T ss_conf 3113403796799816872556681367732254
No 5
>3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell cycle; 1.70A {Mus musculus} PDB: 2wal_A
Probab=8.81 E-value=95 Score=14.45 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=21.0
Q ss_pred CCCCCCC-EEE---ECCCHHHHHHHHCCCCEEEE
Q ss_conf 3322231-012---24306776541058602314
Q 537021.9.peg.8 13 LADDCDA-QYS---LNGNLLKGLCSFGNLPIVKF 42 (44)
Q Consensus 13 laddcda-qys---lngnllkglcsfgnlpivkf 42 (44)
||.|||- .++ ..-.|+..+|.=.+.|+++.
T Consensus 49 LA~d~d~~~Dva~~~~~~Li~AlC~E~~I~li~V 82 (146)
T 3cg6_A 49 LAADEEDEGDIALQIHFTLIQAFCCENDIDIVRV 82 (146)
T ss_dssp EECCTGGGGCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 5278786330257889999999986069886996
No 6
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=8.31 E-value=1.4e+02 Score=13.71 Aligned_cols=23 Identities=35% Similarity=0.761 Sum_probs=19.0
Q ss_pred EECCCHHHHHHHHCCCCEEEEEC
Q ss_conf 22430677654105860231419
Q 537021.9.peg.8 22 SLNGNLLKGLCSFGNLPIVKFIE 44 (44)
Q Consensus 22 slngnllkglcsfgnlpivkfie 44 (44)
++--.|+..+-+||..-.|+|++
T Consensus 27 ~l~~~Llq~l~~~GeviLvRfv~ 49 (91)
T 2dnr_A 27 ALIDELLQQFASFGEVILIRFVE 49 (91)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECS
T ss_pred HHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 99999999987448289999948
No 7
>2kg4_A Growth arrest and DNA-damage-inducible protein GADD45 alpha; flexible regions, monomer, cell cycle; NMR {Homo sapiens}
Probab=7.65 E-value=1e+02 Score=14.28 Aligned_cols=30 Identities=23% Similarity=0.472 Sum_probs=21.8
Q ss_pred CCCCCCCEE----EECCCHHHHHHHHCCCCEEEE
Q ss_conf 332223101----224306776541058602314
Q 537021.9.peg.8 13 LADDCDAQY----SLNGNLLKGLCSFGNLPIVKF 42 (44)
Q Consensus 13 laddcdaqy----slngnllkglcsfgnlpivkf 42 (44)
||.|||-.- ...-.|++.+|.=.+.||+|.
T Consensus 59 LA~d~d~~~dva~~m~~~LieAlC~E~~I~lIkV 92 (165)
T 2kg4_A 59 LAADEDDDRDVALQIHFTLIQAFCCENDINILRV 92 (165)
T ss_dssp EECCTGGGGCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 7468883013678889999999985159886996
No 8
>1oc7_A Cllulase, CEL6A, cellobiohydrolase II; cellulose degradation, cellulase, glycoside hydrolase family 6, processive mechanism; HET: NAG BGC SGC MA3; 1.11A {Humicola insolens} SCOP: c.6.1.1 PDB: 1oc5_A* 1oc6_A* 2bvw_A* 1ocb_A* 1ocj_A* 1ocn_A* 1bvw_A* 1gz1_A*
Probab=5.30 E-value=2.1e+02 Score=12.78 Aligned_cols=13 Identities=31% Similarity=0.506 Sum_probs=10.0
Q ss_pred HHHCCCCEEEEEC
Q ss_conf 4105860231419
Q 537021.9.peg.8 32 CSFGNLPIVKFIE 44 (44)
Q Consensus 32 csfgnlpivkfie 44 (44)
-.+|+.++|-.||
T Consensus 126 ~~~g~~~~vvIlE 138 (364)
T 1oc7_A 126 ISFSDVRTILVIE 138 (364)
T ss_dssp HHTTTSCEEEEEC
T ss_pred HHCCCCCEEEEEC
T ss_conf 8668974399977
No 9
>2zkr_6 60S ribosomal protein L30E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1ysh_C
Probab=4.92 E-value=2.2e+02 Score=12.65 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=18.9
Q ss_pred CCCCCCCEEEECCCHHHHHHHHCCCCEEEEE
Q ss_conf 3322231012243067765410586023141
Q 537021.9.peg.8 13 LADDCDAQYSLNGNLLKGLCSFGNLPIVKFI 43 (44)
Q Consensus 13 laddcdaqyslngnllkglcsfgnlpivkfi 43 (44)
+|.||+... -..+.-+|...+.|++.|.
T Consensus 48 lA~D~~~~~---~~~i~~~c~~~~Ip~~~~~ 75 (115)
T 2zkr_6 48 LANNCPALR---KSEIEYYAMLAKTGVHHYS 75 (115)
T ss_dssp EETTCCSST---TTHHHHHHHHHTCEEEEEE
T ss_pred EECCCCHHH---HHHHHHHHHHCCCCEEEEC
T ss_conf 968899899---9999999986699979978
No 10
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=4.34 E-value=2.3e+02 Score=12.57 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=17.7
Q ss_pred CCCCCCCEEEECCCHHHHHHHHCCCCEEEE
Q ss_conf 332223101224306776541058602314
Q 537021.9.peg.8 13 LADDCDAQYSLNGNLLKGLCSFGNLPIVKF 42 (44)
Q Consensus 13 laddcdaqyslngnllkglcsfgnlpivkf 42 (44)
+|.||+... -.-+..+|...|.|+..|
T Consensus 43 lA~D~~~~~---~~~i~~~c~~~~Vpv~~~ 69 (110)
T 3cpq_A 43 LAGNIPKDL---EEDVKYYAKLSNIPVYQH 69 (110)
T ss_dssp ECTTCBHHH---HHHHHHHHHHTTCCEEEC
T ss_pred EECCCCHHH---HHHHHHHHHHCCCEEEEE
T ss_conf 968799899---999999999759679997
Done!