Query 537021.9.peg.818_1 Match_columns 44 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 01:34:52 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_818.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2jso_A Polymyxin resistance pr 18.2 22 0.00092 17.5 0.1 24 5-28 38-61 (88) 2 1ufw_A Synaptojanin 2; RNP dom 17.4 56 0.0024 15.6 2.0 23 22-44 36-58 (95) 3 3ffm_A Growth arrest and DNA-d 10.9 73 0.0031 15.0 1.1 30 13-42 70-103 (167) 4 1qi9_A Protein (vanadium bromo 9.8 53 0.0022 15.7 0.1 34 2-35 518-551 (556) 5 3cg6_A Growth arrest and DNA-d 8.8 95 0.004 14.4 1.1 30 13-42 49-82 (146) 6 2dnr_A Synaptojanin-1; RRM dom 8.3 1.4E+02 0.0057 13.7 1.7 23 22-44 27-49 (91) 7 2kg4_A Growth arrest and DNA-d 7.7 1E+02 0.0043 14.3 0.8 30 13-42 59-92 (165) 8 1oc7_A Cllulase, CEL6A, cellob 5.3 2.1E+02 0.0089 12.8 2.0 13 32-44 126-138 (364) 9 2zkr_6 60S ribosomal protein L 4.9 2.2E+02 0.0095 12.6 1.8 28 13-43 48-75 (115) 10 3cpq_A 50S ribosomal protein L 4.3 2.3E+02 0.0098 12.6 1.1 27 13-42 43-69 (110) No 1 >2jso_A Polymyxin resistance protein PMRD; antibiotic resistance, transcription, signaling protein; NMR {Escherichia coli K12} Probab=18.22 E-value=22 Score=17.51 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=19.0 Q ss_pred EEEECCCCCCCCCCCEEEECCCHH Q ss_conf 998607743322231012243067 Q 537021.9.peg.8 5 FLLFEGSDLADDCDAQYSLNGNLL 28 (44) Q Consensus 5 fllfegsdladdcdaqyslngnll 28 (44) +.+++|.-|..--||||-+|.|-. T Consensus 38 ~~l~~gD~LsPL~dA~YciNrn~~ 61 (88) T 2jso_A 38 FAVKVGDLLSPLQNALYCINREKL 61 (88) T ss_dssp SCCCTTCEECBSSSSEEEEBTEEE T ss_pred CCCCCCCCCCCCHHHHHHHCCCCC T ss_conf 465765403601230676537988 No 2 >1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=17.38 E-value=56 Score=15.56 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=19.4 Q ss_pred EECCCHHHHHHHHCCCCEEEEEC Q ss_conf 22430677654105860231419 Q 537021.9.peg.8 22 SLNGNLLKGLCSFGNLPIVKFIE 44 (44) Q Consensus 22 slngnllkglcsfgnlpivkfie 44 (44) ++--.||+.+-+||+.-.|+|++ T Consensus 36 ~l~~eLLq~l~~~GeViLVRfv~ 58 (95) T 1ufw_A 36 DLRTELMQTLGSYGTIVLVRINQ 58 (95) T ss_dssp HHHHHHHHHHHHHSCCSEEEEET T ss_pred HHHHHHHHHHHHCCEEEEEEEEC T ss_conf 99999999864166399999948 No 3 >3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma; beta-turn-helix, cell cycle; 2.30A {Homo sapiens} Probab=10.90 E-value=73 Score=15.00 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=22.2 Q ss_pred CCCCCCCEE----EECCCHHHHHHHHCCCCEEEE Q ss_conf 332223101----224306776541058602314 Q 537021.9.peg.8 13 LADDCDAQY----SLNGNLLKGLCSFGNLPIVKF 42 (44) Q Consensus 13 laddcdaqy----slngnllkglcsfgnlpivkf 42 (44) ||.|||-.- ...-.|++.+|.=.+.||+|. T Consensus 70 LA~~cde~~dialqmy~kLieAlC~E~~I~likV 103 (167) T 3ffm_A 70 LAAGEEDEGDIALQIHFTLIQAFCCENDIDIVRV 103 (167) T ss_dssp EECCGGGTTCHHHHHHHHHHHHHHHHTTCEEEEE T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 6368886202578899999999985169876983 No 4 >1qi9_A Protein (vanadium bromoperoxidase); haloperoxidase, oxidoreductase; 2.05A {Ascophyllum nodosum} SCOP: a.111.1.2 Probab=9.82 E-value=53 Score=15.66 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=28.1 Q ss_pred CEEEEEECCCCCCCCCCCEEEECCCHHHHHHHHC Q ss_conf 7179986077433222310122430677654105 Q 537021.9.peg.8 2 PMHFLLFEGSDLADDCDAQYSLNGNLLKGLCSFG 35 (44) Q Consensus 2 pmhfllfegsdladdcdaqyslngnllkglcsfg 35 (44) .+.|-+|.|.-+...-++.|+++|.|..|..+-| T Consensus 518 ~~~~~~fDG~~v~i~~~~t~~~dG~~~~g~~~~~ 551 (556) T 1qi9_A 518 TFEFRLFTGEVIKLFQDGTFTIDGFKCPGLVYTG 551 (556) T ss_dssp EEEEECTTSCEEEEETTSCEEETTEECSSSSCCC T ss_pred CCEEEECCCCEEEEECCCCEEECCCCCCCCCCCC T ss_conf 3113403796799816872556681367732254 No 5 >3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell cycle; 1.70A {Mus musculus} PDB: 2wal_A Probab=8.81 E-value=95 Score=14.45 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=21.0 Q ss_pred CCCCCCC-EEE---ECCCHHHHHHHHCCCCEEEE Q ss_conf 3322231-012---24306776541058602314 Q 537021.9.peg.8 13 LADDCDA-QYS---LNGNLLKGLCSFGNLPIVKF 42 (44) Q Consensus 13 laddcda-qys---lngnllkglcsfgnlpivkf 42 (44) ||.|||- .++ ..-.|+..+|.=.+.|+++. T Consensus 49 LA~d~d~~~Dva~~~~~~Li~AlC~E~~I~li~V 82 (146) T 3cg6_A 49 LAADEEDEGDIALQIHFTLIQAFCCENDIDIVRV 82 (146) T ss_dssp EECCTGGGGCHHHHHHHHHHHHHHHHTTCEEEEE T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 5278786330257889999999986069886996 No 6 >2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=8.31 E-value=1.4e+02 Score=13.71 Aligned_cols=23 Identities=35% Similarity=0.761 Sum_probs=19.0 Q ss_pred EECCCHHHHHHHHCCCCEEEEEC Q ss_conf 22430677654105860231419 Q 537021.9.peg.8 22 SLNGNLLKGLCSFGNLPIVKFIE 44 (44) Q Consensus 22 slngnllkglcsfgnlpivkfie 44 (44) ++--.|+..+-+||..-.|+|++ T Consensus 27 ~l~~~Llq~l~~~GeviLvRfv~ 49 (91) T 2dnr_A 27 ALIDELLQQFASFGEVILIRFVE 49 (91) T ss_dssp HHHHHHHHHHHTTCCEEEEEECS T ss_pred HHHHHHHHHHHHCCCEEEEEEEC T ss_conf 99999999987448289999948 No 7 >2kg4_A Growth arrest and DNA-damage-inducible protein GADD45 alpha; flexible regions, monomer, cell cycle; NMR {Homo sapiens} Probab=7.65 E-value=1e+02 Score=14.28 Aligned_cols=30 Identities=23% Similarity=0.472 Sum_probs=21.8 Q ss_pred CCCCCCCEE----EECCCHHHHHHHHCCCCEEEE Q ss_conf 332223101----224306776541058602314 Q 537021.9.peg.8 13 LADDCDAQY----SLNGNLLKGLCSFGNLPIVKF 42 (44) Q Consensus 13 laddcdaqy----slngnllkglcsfgnlpivkf 42 (44) ||.|||-.- ...-.|++.+|.=.+.||+|. T Consensus 59 LA~d~d~~~dva~~m~~~LieAlC~E~~I~lIkV 92 (165) T 2kg4_A 59 LAADEDDDRDVALQIHFTLIQAFCCENDINILRV 92 (165) T ss_dssp EECCTGGGGCHHHHHHHHHHHHHHHHTTCCEEEE T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 7468883013678889999999985159886996 No 8 >1oc7_A Cllulase, CEL6A, cellobiohydrolase II; cellulose degradation, cellulase, glycoside hydrolase family 6, processive mechanism; HET: NAG BGC SGC MA3; 1.11A {Humicola insolens} SCOP: c.6.1.1 PDB: 1oc5_A* 1oc6_A* 2bvw_A* 1ocb_A* 1ocj_A* 1ocn_A* 1bvw_A* 1gz1_A* Probab=5.30 E-value=2.1e+02 Score=12.78 Aligned_cols=13 Identities=31% Similarity=0.506 Sum_probs=10.0 Q ss_pred HHHCCCCEEEEEC Q ss_conf 4105860231419 Q 537021.9.peg.8 32 CSFGNLPIVKFIE 44 (44) Q Consensus 32 csfgnlpivkfie 44 (44) -.+|+.++|-.|| T Consensus 126 ~~~g~~~~vvIlE 138 (364) T 1oc7_A 126 ISFSDVRTILVIE 138 (364) T ss_dssp HHTTTSCEEEEEC T ss_pred HHCCCCCEEEEEC T ss_conf 8668974399977 No 9 >2zkr_6 60S ribosomal protein L30E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1ysh_C Probab=4.92 E-value=2.2e+02 Score=12.65 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=18.9 Q ss_pred CCCCCCCEEEECCCHHHHHHHHCCCCEEEEE Q ss_conf 3322231012243067765410586023141 Q 537021.9.peg.8 13 LADDCDAQYSLNGNLLKGLCSFGNLPIVKFI 43 (44) Q Consensus 13 laddcdaqyslngnllkglcsfgnlpivkfi 43 (44) +|.||+... -..+.-+|...+.|++.|. T Consensus 48 lA~D~~~~~---~~~i~~~c~~~~Ip~~~~~ 75 (115) T 2zkr_6 48 LANNCPALR---KSEIEYYAMLAKTGVHHYS 75 (115) T ss_dssp EETTCCSST---TTHHHHHHHHHTCEEEEEE T ss_pred EECCCCHHH---HHHHHHHHHHCCCCEEEEC T ss_conf 968899899---9999999986699979978 No 10 >3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii} Probab=4.34 E-value=2.3e+02 Score=12.57 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=17.7 Q ss_pred CCCCCCCEEEECCCHHHHHHHHCCCCEEEE Q ss_conf 332223101224306776541058602314 Q 537021.9.peg.8 13 LADDCDAQYSLNGNLLKGLCSFGNLPIVKF 42 (44) Q Consensus 13 laddcdaqyslngnllkglcsfgnlpivkf 42 (44) +|.||+... -.-+..+|...|.|+..| T Consensus 43 lA~D~~~~~---~~~i~~~c~~~~Vpv~~~ 69 (110) T 3cpq_A 43 LAGNIPKDL---EEDVKYYAKLSNIPVYQH 69 (110) T ss_dssp ECTTCBHHH---HHHHHHHHHHTTCCEEEC T ss_pred EECCCCHHH---HHHHHHHHHHCCCEEEEE T ss_conf 968799899---999999999759679997 Done!