RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= 537021.9.peg.818_1
         (44 letters)



>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine
          ladder, asparagine ladder, virulence factor, solenoid,
          cell WALL; 2.70A {Listeria monocytogenes} (A:)
          Length = 457

 Score = 24.5 bits (51), Expect = 4.7
 Identities = 1/17 (5%), Positives = 4/17 (23%)

Query: 22 SLNGNLLKGLCSFGNLP 38
          +L     +    +    
Sbjct: 2  TLKAGQTQSFNDWFPDD 18


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.326    0.146    0.459 

Gapped
Lambda     K      H
   0.267   0.0339    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 320,733
Number of extensions: 8409
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 7
Length of query: 44
Length of database: 4,956,049
Length adjustment: 16
Effective length of query: 28
Effective length of database: 4,415,169
Effective search space: 123624732
Effective search space used: 123624732
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (24.1 bits)