Query 537021.9.peg.82_1 Match_columns 41 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Mon May 23 07:59:15 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_82.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2ayu_A Nucleosome assembly pr 31.9 16 0.00047 18.6 0.8 14 22-35 41-54 (55) 2 >1f45_B Interleukin-12 alpha c 9.0 1.2E+02 0.0036 14.3 0.9 16 3-18 130-145 (197) 3 >2e50_A Protein SET; histone c 8.4 1.1E+02 0.0033 14.4 0.5 14 23-36 3-16 (162) 4 >2j9u_A VPS28, vacuolar protei 6.9 2E+02 0.0059 13.3 1.2 16 23-41 33-48 (96) 5 >1jo6_A KCNMB2, potassium larg 5.5 1.4E+02 0.0043 13.9 -0.1 15 3-17 23-37 (45) 6 >2dpl_A GMP synthetase, GMP sy 4.6 1.4E+02 0.0042 13.9 -0.7 15 25-39 90-105 (119) 7 >2jov_A Hypothetical protein C 4.3 1E+02 0.003 14.6 -1.6 25 1-30 1-26 (85) 8 >1z8y_A Spike glycoprotein E1; 4.2 1.2E+02 0.0036 14.3 -1.3 19 16-34 60-78 (121) 9 >2ywb_A GMP synthase [glutamin 3.9 1.9E+02 0.0055 13.4 -0.6 14 26-39 93-107 (121) 10 >3e21_A HFAF1, FAS-associated 3.8 2.9E+02 0.0085 12.5 0.4 11 31-41 35-45 (45) No 1 >>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} (A:89-143) Probab=31.91 E-value=16 Score=18.56 Aligned_cols=14 Identities=29% Similarity=0.748 Sum_probs=11.7 Q ss_pred CCCHHHHHHHHHHH Q ss_conf 73022346788515 Q 537021.9.peg.8 22 TPLLSKRTEVITGI 35 (41) Q Consensus 22 tpllskrtevitgi 35 (41) .||..||.++|+|- T Consensus 41 ~Ply~kR~eIV~G~ 54 (55) T 2ayu_A 41 KPIWEQRSRIISGQ 54 (55) T ss_dssp HHHHHHHHHHHHTS T ss_pred CHHHHHHHHHHCCC T ss_conf 86999999997688 No 2 >>1f45_B Interleukin-12 alpha chain; cytokine, cytokine/cytpkine complex; HET: NAG MAN; 2.80A {Homo sapiens} (B:) Probab=9.01 E-value=1.2e+02 Score=14.30 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=7.7 Q ss_pred CCHHHHHHHHHHHHHH Q ss_conf 1010024443211221 Q 537021.9.peg.8 3 QRYRDTSLLSKKTEVI 18 (41) Q Consensus 3 qryrdtsllskktevi 18 (41) |.+-|..+|.--.|.+ T Consensus 130 qi~Ld~~mL~aideLM 145 (197) T 1f45_B 130 QIFLDQNMLAVIDELM 145 (197) T ss_dssp CCSHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 2440146999999999 No 3 >>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} (A:64-225) Probab=8.37 E-value=1.1e+02 Score=14.44 Aligned_cols=14 Identities=43% Similarity=0.790 Sum_probs=9.8 Q ss_pred CCHHHHHHHHHHHH Q ss_conf 30223467885157 Q 537021.9.peg.8 23 PLLSKRTEVITGIN 36 (41) Q Consensus 23 pllskrtevitgin 36 (41) |++.+|.+.|.||. T Consensus 3 P~y~~R~~ii~~IP 16 (162) T 2e50_A 3 PFFQKRSELIAKIP 16 (162) T ss_dssp HHHHHHHHHHTTST T ss_pred CHHHHHHHHHCCCC T ss_conf 19999877741488 No 4 >>2j9u_A VPS28, vacuolar protein sorting-associated protein 28; MVB, zinc, CHMP, ESCRT, membrane, transport, NZF finger, HIV budding, zinc-finger; 2.00A {Saccharomyces cerevisiae} (A:) Probab=6.92 E-value=2e+02 Score=13.26 Aligned_cols=16 Identities=50% Similarity=0.870 Sum_probs=11.2 Q ss_pred CCHHHHHHHHHHHHHHCCC Q ss_conf 3022346788515752679 Q 537021.9.peg.8 23 PLLSKRTEVITGINRVMPE 41 (41) Q Consensus 23 pllskrtevitginrvmpe 41 (41) |+|+ +++.++||+.|. T Consensus 33 PlL~---dL~~slnkl~~~ 48 (96) T 2j9u_A 33 PLLA---ELLISINRVTRD 48 (96) T ss_dssp HHHH---HHHHHHHHHCCC T ss_pred HHHH---HHHHHHHCCCCC T ss_conf 5699---999999816975 No 5 >>1jo6_A KCNMB2, potassium large conductance calcium-activated channel, subfamily M, beta member 2..., large; helix, ION channel, cytoplasmic PART of; NMR {Synthetic} (A:) Probab=5.53 E-value=1.4e+02 Score=13.93 Aligned_cols=15 Identities=47% Similarity=0.713 Sum_probs=11.1 Q ss_pred CCHHHHHHHHHHHHH Q ss_conf 101002444321122 Q 537021.9.peg.8 3 QRYRDTSLLSKKTEV 17 (41) Q Consensus 3 qryrdtsllskktev 17 (41) |..|+..||.|+..| T Consensus 23 QKiRe~DlLdKrkTV 37 (45) T 1jo6_A 23 QKIRDHDLLDKRKTV 37 (45) T ss_dssp HHHHHHHTTTSSSCC T ss_pred HHHHHHHHHHHHCEE T ss_conf 999875677653132 No 6 >>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii OT3} PDB: 2z0c_A 3a4i_A (A:190-308) Probab=4.60 E-value=1.4e+02 Score=13.95 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=9.4 Q ss_pred HHHH-HHHHHHHHHHC Q ss_conf 2234-67885157526 Q 537021.9.peg.8 25 LSKR-TEVITGINRVM 39 (41) Q Consensus 25 lskr-tevitginrvm 39 (41) +++| +..+-|||||+ T Consensus 90 i~~~I~~~v~~VnRVv 105 (119) T 2dpl_A 90 IAFRITSEIPEVGRVL 105 (119) T ss_dssp HHHHHHHHCTTEEEEE T ss_pred HHHHHHHHCCCCCEEE T ss_conf 9999624179833699 No 7 >>2jov_A Hypothetical protein CPE0013; alpha + beta sandwich, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens} (A:) Probab=4.29 E-value=1e+02 Score=14.63 Aligned_cols=25 Identities=8% Similarity=0.122 Sum_probs=15.9 Q ss_pred CCCCHHHHHHHHHHHHHHCCC-CCCHHHHHH Q ss_conf 961010024443211221487-730223467 Q 537021.9.peg.8 1 MPQRYRDTSLLSKKTEVINGE-TPLLSKRTE 30 (41) Q Consensus 1 mpqryrdtsllskktevinge-tpllskrte 30 (41) ||.|---|+ -.|.||+ .|++|-||+ T Consensus 1 ~P~RivTtt-----V~V~gg~~~~~vpVKT~ 26 (85) T 2jov_A 1 MHKDIFTSV-----VRVRGSKKYNVVPVKSN 26 (85) T ss_dssp CCCEEEEEE-----EEECSSSSCSEEEEEEE T ss_pred CCCCEEEEE-----EEEECCCCCEEEEEECC T ss_conf 996489899-----99818970004654329 No 8 >>1z8y_A Spike glycoprotein E1; icosahedral enveloped virus, cryo-electron microscopy, icosahedral virus; 9.00A {Sindbis virus} (A:1-40,A:127-169,A:253-290) Probab=4.15 E-value=1.2e+02 Score=14.29 Aligned_cols=19 Identities=47% Similarity=0.573 Sum_probs=15.4 Q ss_pred HHHCCCCCCHHHHHHHHHH Q ss_conf 2214877302234678851 Q 537021.9.peg.8 16 EVINGETPLLSKRTEVITG 34 (41) Q Consensus 16 evingetpllskrtevitg 34 (41) -..||-||--||.-.||.| T Consensus 60 vyvngvtpgtskdlkviag 78 (121) T 1z8y_A 60 VYVNGVTPGTSKDLKVIAG 78 (121) T ss_dssp CCCSSSCCCEETTEEECCC T ss_pred EEECCCCCEECCCEEEEEC T ss_conf 9974756401266069943 No 9 >>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway; 2.10A {Thermus thermophilus HB8} PDB: 2ywc_A* (A:383-503) Probab=3.87 E-value=1.9e+02 Score=13.40 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=8.7 Q ss_pred HHH-HHHHHHHHHHC Q ss_conf 234-67885157526 Q 537021.9.peg.8 26 SKR-TEVITGINRVM 39 (41) Q Consensus 26 skr-tevitginrvm 39 (41) ++| +..+-|||||+ T Consensus 93 s~~I~~~v~~VnRVv 107 (121) T 2ywb_A 93 ARRITRRVPEIGRVV 107 (121) T ss_dssp HHHHHHHCTTCCEEE T ss_pred HHHHHHHCCCCCEEE T ss_conf 999765089866599 No 10 >>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens} (A:) Probab=3.85 E-value=2.9e+02 Score=12.48 Aligned_cols=11 Identities=36% Similarity=0.848 Sum_probs=7.1 Q ss_pred HHHHHHHHCCC Q ss_conf 88515752679 Q 537021.9.peg.8 31 VITGINRVMPE 41 (41) Q Consensus 31 vitginrvmpe 41 (41) ....||||||. T Consensus 35 L~~Av~~v~Pq 45 (45) T 3e21_A 35 LVAAINGVIPQ 45 (45) T ss_dssp HHHHHTTC--- T ss_pred HHHHHHHHCCC T ss_conf 99999876689 Done!