BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.82_1
         (41 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.82_1 
          Length = 41

 Score = 84.0 bits (206), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 41/41 (100%), Positives = 41/41 (100%)

Query: 1  MPQRYRDTSLLSKKTEVINGETPLLSKRTEVITGINRVMPE 41
          MPQRYRDTSLLSKKTEVINGETPLLSKRTEVITGINRVMPE
Sbjct: 1  MPQRYRDTSLLSKKTEVINGETPLLSKRTEVITGINRVMPE 41


>gi|254780782|ref|YP_003065195.1| succinyl-diaminopimelate desuccinylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 389

 Score = 21.2 bits (43), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 11/19 (57%)

Query: 8   TSLLSKKTEVINGETPLLS 26
           TSLLSK      G  PLLS
Sbjct: 312 TSLLSKSIYNTTGNIPLLS 330


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.312    0.130    0.349 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,814
Number of Sequences: 1233
Number of extensions: 426
Number of successful extensions: 4
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 41
length of database: 328,796
effective HSP length: 15
effective length of query: 26
effective length of database: 310,301
effective search space:  8067826
effective search space used:  8067826
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.5 bits)
S2: 31 (16.5 bits)