BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.834_1
         (42 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.834_1 
          Length = 42

 Score = 88.6 bits (218), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 42/42 (100%), Positives = 42/42 (100%)

Query: 1  MRDNKNFSQLFTYLDIPRHKYRIMGILAEYLIANSFIKSDNR 42
          MRDNKNFSQLFTYLDIPRHKYRIMGILAEYLIANSFIKSDNR
Sbjct: 1  MRDNKNFSQLFTYLDIPRHKYRIMGILAEYLIANSFIKSDNR 42


>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 820

 Score = 21.2 bits (43), Expect = 3.2,   Method: Composition-based stats.
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 6   NFSQLFTYLDIPRHKY 21
           N + L  YL +PR+KY
Sbjct: 587 NENNLQDYLGVPRYKY 602


>gi|254780698|ref|YP_003065111.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 336

 Score = 20.4 bits (41), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 5   KNFSQLFTYLDIPRHKYR 22
           KNF Q + Y  I + +YR
Sbjct: 203 KNFPQYYKYFSIRKFRYR 220


>gi|254781066|ref|YP_003065479.1| putative lysyl-tRNA synthetase protein [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 355

 Score = 19.6 bits (39), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 23 IMGILAEYLIANSFIKSDN 41
          I   L EY + N FI+ D+
Sbjct: 28 IQSSLREYFVENQFIEIDS 46


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.328    0.142    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,969
Number of Sequences: 1233
Number of extensions: 747
Number of successful extensions: 6
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 42
length of database: 328,796
effective HSP length: 16
effective length of query: 26
effective length of database: 309,068
effective search space:  8035768
effective search space used:  8035768
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.3 bits)
S2: 31 (16.5 bits)