Query 537021.9.peg.851_1 Match_columns 38 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 39220 Date Wed May 25 00:35:51 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_851.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PHA00691 hypothetical protein 32.9 44 0.0011 16.7 2.9 25 10-34 9-33 (68) 2 pfam10902 DUF2693 Protein of u 28.9 53 0.0013 16.3 2.7 18 16-33 5-22 (83) 3 pfam11210 DUF2996 Protein of u 19.0 47 0.0012 16.6 0.8 11 12-22 58-68 (118) 4 cd06879 PX_UP1_plant The phosp 15.9 75 0.0019 15.5 1.3 16 19-34 41-56 (138) 5 pfam06016 Reovirus_L2 Reovirus 15.8 77 0.002 15.4 1.3 15 19-33 1145-1159(1289) 6 pfam00886 Ribosomal_S16 Riboso 13.9 1.1E+02 0.0028 14.6 1.7 12 20-31 5-16 (58) 7 pfam11493 TSP9 Thylakoid solub 12.9 58 0.0015 16.1 0.0 18 3-27 15-32 (80) 8 COG4921 Uncharacterized protei 12.7 1.4E+02 0.0035 14.1 1.9 14 20-33 14-27 (131) 9 COG0228 RpsP Ribosomal protein 12.6 1.1E+02 0.0029 14.5 1.4 12 19-30 11-22 (87) 10 CHL00005 rps16 ribosomal prote 11.7 1.3E+02 0.0034 14.2 1.6 12 20-31 12-23 (82) No 1 >PHA00691 hypothetical protein Probab=32.87 E-value=44 Score=16.67 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=19.3 Q ss_pred CCCCEEEEEEECCCEEEEEEEEEEE Q ss_conf 1464599999626627999999986 Q 537021.9.peg.8 10 LHENFWLFFLKKDDFYRIMVCVISL 34 (38) Q Consensus 10 lhenfwlfflkkddfyrimvcvisl 34 (38) -|||=-.+.|||.|.|.+||.-..- T Consensus 9 ~~ENGr~WVL~K~~~Y~V~vSG~TH 33 (68) T PHA00691 9 AYENGRVWVLKKSDSYTVFVSGVTH 33 (68) T ss_pred HCCCCEEEEEEECCCEEEEEECCCC T ss_conf 0037618999827827999862432 No 2 >pfam10902 DUF2693 Protein of unknown function (DUF2693). This viral family of proteins has no known function. Probab=28.89 E-value=53 Score=16.28 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=15.7 Q ss_pred EEEEECCCEEEEEEEEEE Q ss_conf 999962662799999998 Q 537021.9.peg.8 16 LFFLKKDDFYRIMVCVIS 33 (38) Q Consensus 16 lfflkkddfyrimvcvis 33 (38) +-|-|.|.-.|.|.|-.. T Consensus 5 V~F~K~DGt~R~M~cTld 22 (83) T pfam10902 5 VVFEKADGTIRVMQATRD 22 (83) T ss_pred EEEEECCCCEEEEEEECC T ss_conf 999963898899998638 No 3 >pfam11210 DUF2996 Protein of unknown function (DUF2996). This family of proteins has no known function. Probab=19.00 E-value=47 Score=16.56 Aligned_cols=11 Identities=45% Similarity=1.117 Sum_probs=9.0 Q ss_pred CCEEEEEEECC Q ss_conf 64599999626 Q 537021.9.peg.8 12 ENFWLFFLKKD 22 (38) Q Consensus 12 enfwlfflkkd 22 (38) -+||++|.+.| T Consensus 58 r~Fwl~F~~~d 68 (118) T pfam11210 58 RRFWLCFPEED 68 (118) T ss_pred CEEEEEECHHH T ss_conf 78999936110 No 4 >cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. Probab=15.88 E-value=75 Score=15.48 Aligned_cols=16 Identities=44% Similarity=0.511 Sum_probs=12.2 Q ss_pred EECCCEEEEEEEEEEE Q ss_conf 9626627999999986 Q 537021.9.peg.8 19 LKKDDFYRIMVCVISL 34 (38) Q Consensus 19 lkkddfyrimvcvisl 34 (38) .-.|+|||+-|-+-|- T Consensus 41 ~~~~~fyrvqvgiqSP 56 (138) T cd06879 41 NAVDKFYRVQVGVQSP 56 (138) T ss_pred CCCCCEEEEEEECCCC T ss_conf 2333168899843587 No 5 >pfam06016 Reovirus_L2 Reovirus core-spike protein lambda-2 (L2). This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts. Probab=15.75 E-value=77 Score=15.42 Aligned_cols=15 Identities=40% Similarity=0.780 Sum_probs=11.0 Q ss_pred EECCCEEEEEEEEEE Q ss_conf 962662799999998 Q 537021.9.peg.8 19 LKKDDFYRIMVCVIS 33 (38) Q Consensus 19 lkkddfyrimvcvis 33 (38) +.-|++||.|||+.+ T Consensus 1145 i~~dpyY~lavfv~~ 1159 (1289) T pfam06016 1145 ITCDPYYRLAVFVVS 1159 (1289) T ss_pred EEECCHHHEEEEEEE T ss_conf 463524517899987 No 6 >pfam00886 Ribosomal_S16 Ribosomal protein S16. Probab=13.93 E-value=1.1e+02 Score=14.62 Aligned_cols=12 Identities=58% Similarity=0.874 Sum_probs=9.4 Q ss_pred ECCCEEEEEEEE Q ss_conf 626627999999 Q 537021.9.peg.8 20 KKDDFYRIMVCV 31 (38) Q Consensus 20 kkddfyrimvcv 31 (38) |+.-||||.|.- T Consensus 5 k~~P~YrIVv~d 16 (58) T pfam00886 5 KKRPFYRIVVAD 16 (58) T ss_pred CCCCEEEEEEEE T ss_conf 789868999974 No 7 >pfam11493 TSP9 Thylakoid soluble phosphoprotein TSP9. The plant-specific protein, TSP9 is phosphorylated and released in response to changing light conditions from the photosynthetic membrane. The protein resembles the characteristics of transcription/translation regulatory factors. The structure of the protein is predicted to consist of a random coil. Probab=12.89 E-value=58 Score=16.08 Aligned_cols=18 Identities=56% Similarity=1.198 Sum_probs=12.7 Q ss_pred HHHHHHHCCCCEEEEEEECCCEEEE Q ss_conf 3131340146459999962662799 Q 537021.9.peg.8 3 LYDYILGLHENFWLFFLKKDDFYRI 27 (38) Q Consensus 3 lydyilglhenfwlfflkkddfyri 27 (38) +.|+||| |..|.|.||.. T Consensus 15 ~~D~ilG-------~l~KedQfyET 32 (80) T pfam11493 15 LFDFILG-------FITKEDQFYET 32 (80) T ss_pred HHHHHHH-------HHHHHHHCEEC T ss_conf 7999986-------32201010014 No 8 >COG4921 Uncharacterized protein conserved in archaea [Function unknown] Probab=12.71 E-value=1.4e+02 Score=14.08 Aligned_cols=14 Identities=36% Similarity=0.866 Sum_probs=11.0 Q ss_pred ECCCEEEEEEEEEE Q ss_conf 62662799999998 Q 537021.9.peg.8 20 KKDDFYRIMVCVIS 33 (38) Q Consensus 20 kkddfyrimvcvis 33 (38) .+|.|||+..||.. T Consensus 14 e~Dg~yrV~A~V~~ 27 (131) T COG4921 14 EEDGHYRVTACVSA 27 (131) T ss_pred CCCCEEEEEEEEEE T ss_conf 33643899988999 No 9 >COG0228 RpsP Ribosomal protein S16 [Translation, ribosomal structure and biogenesis] Probab=12.62 E-value=1.1e+02 Score=14.53 Aligned_cols=12 Identities=58% Similarity=0.897 Sum_probs=9.4 Q ss_pred EECCCEEEEEEE Q ss_conf 962662799999 Q 537021.9.peg.8 19 LKKDDFYRIMVC 30 (38) Q Consensus 19 lkkddfyrimvc 30 (38) -||.-||||.|. T Consensus 11 ~kk~P~YrIVVa 22 (87) T COG0228 11 SKKRPFYRIVVA 22 (87) T ss_pred CCCCCEEEEEEE T ss_conf 766984799984 No 10 >CHL00005 rps16 ribosomal protein S16 Probab=11.74 E-value=1.3e+02 Score=14.15 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=9.3 Q ss_pred ECCCEEEEEEEE Q ss_conf 626627999999 Q 537021.9.peg.8 20 KKDDFYRIMVCV 31 (38) Q Consensus 20 kkddfyrimvcv 31 (38) |+.-||||.|.- T Consensus 12 kk~P~YrIVv~d 23 (82) T CHL00005 12 KQQAVYRIVAID 23 (82) T ss_pred CCCCEEEEEEEE T ss_conf 889826899873 Done!