Query         537021.9.peg.851_1
Match_columns 38
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed May 25 02:24:16 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_851.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1x63a2 g.39.1.3 (A:45-76) Fou  20.7      18  0.0013   16.4   1.3   11   16-26     13-23  (32)
  2 d2fomb1 b.47.1.3 (B:18-167) NS  14.2      33  0.0024   15.0   1.4   11   21-31      2-12  (150)
  3 d2uubp1 d.27.1.1 (P:1-83) Ribo   8.2      68   0.005   13.3   1.3   11   20-30     12-22  (83)
  4 d2gy9p1 d.27.1.1 (P:1-78) Ribo   7.8      73  0.0053   13.1   1.3   11   20-30     12-22  (78)
  5 d3bn0a1 d.27.1.1 (A:2-102) Rib   7.2      71  0.0052   13.2   1.1   14   18-31     10-23  (101)
  6 d1nh2d2 b.56.1.1 (D:55-121) Sm   4.9 1.1E+02  0.0083   12.1   1.7   16   10-25     17-32  (67)
  7 d1nvpd2 b.56.1.1 (D:54-99) Sma   3.8 1.4E+02    0.01   11.6   1.7   15   10-24     14-28  (46)
  8 d1s16a1 d.14.1.3 (A:1217-1383)   3.3      71  0.0052   13.2  -1.1   16   21-36     93-108 (167)
  9 d2gnoa1 a.80.1.1 (A:209-306) g   3.1   1E+02  0.0073   12.4  -0.5    6   10-15     52-57  (98)
 10 d1kija1 d.14.1.3 (A:221-392) D   2.9 1.2E+02   0.009   11.9  -0.2   20   19-38     90-109 (172)

No 1  
>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.69  E-value=18  Score=16.36  Aligned_cols=11  Identities=55%  Similarity=0.960  Sum_probs=9.2

Q ss_pred             EEEEECCCEEE
Q ss_conf             99996266279
Q 537021.9.peg.8   16 LFFLKKDDFYR   26 (38)
Q Consensus        16 lfflkkddfyr   26 (38)
                      -||-|.+|||-
T Consensus        13 sffpkg~d~yc   23 (32)
T d1x63a2          13 SFFPKGEDFYC   23 (32)
T ss_dssp             CEEEETTEEEE
T ss_pred             CCCCCCCCEEE
T ss_conf             42479982799


No 2  
>d2fomb1 b.47.1.3 (B:18-167) NS3 protease {Dengue virus type 2 [TaxId: 11060]}
Probab=14.20  E-value=33  Score=14.97  Aligned_cols=11  Identities=36%  Similarity=0.341  Sum_probs=7.7

Q ss_pred             CCCEEEEEEEE
Q ss_conf             26627999999
Q 537021.9.peg.8   21 KDDFYRIMVCV   31 (38)
Q Consensus        21 kddfyrimvcv   31 (38)
                      +|-+||||+--
T Consensus         2 ~dGvYRI~~~g   12 (150)
T d2fomb1           2 EDGAYRIKQKG   12 (150)
T ss_dssp             CSEEEEEEEEE
T ss_pred             CCCEEEEEECC
T ss_conf             98479998752


No 3  
>d2uubp1 d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus thermophilus [TaxId: 274]}
Probab=8.18  E-value=68  Score=13.26  Aligned_cols=11  Identities=45%  Similarity=0.794  Sum_probs=8.7

Q ss_pred             ECCCEEEEEEE
Q ss_conf             62662799999
Q 537021.9.peg.8   20 KKDDFYRIMVC   30 (38)
Q Consensus        20 kkddfyrimvc   30 (38)
                      |+.-||||.|.
T Consensus        12 k~~P~yrIVv~   22 (83)
T d2uubp1          12 KHNPHYRIVVT   22 (83)
T ss_dssp             TTBCCEEEEEE
T ss_pred             CCCCEEEEEEE
T ss_conf             89985899997


No 4  
>d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli [TaxId: 562]}
Probab=7.80  E-value=73  Score=13.11  Aligned_cols=11  Identities=45%  Similarity=0.917  Sum_probs=8.7

Q ss_pred             ECCCEEEEEEE
Q ss_conf             62662799999
Q 537021.9.peg.8   20 KKDDFYRIMVC   30 (38)
Q Consensus        20 kkddfyrimvc   30 (38)
                      |+.-||||.|.
T Consensus        12 k~~P~YrIVv~   22 (78)
T d2gy9p1          12 KKRPFYQVVVA   22 (78)
T ss_dssp             TTBCCEEEEEE
T ss_pred             CCCCEEEEEEE
T ss_conf             89984799986


No 5  
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus [TaxId: 63363]}
Probab=7.23  E-value=71  Score=13.17  Aligned_cols=14  Identities=36%  Similarity=0.354  Sum_probs=9.9

Q ss_pred             EEECCCEEEEEEEE
Q ss_conf             99626627999999
Q 537021.9.peg.8   18 FLKKDDFYRIMVCV   31 (38)
Q Consensus        18 flkkddfyrimvcv   31 (38)
                      =-|+.-||||.|.-
T Consensus        10 G~k~~p~yrIVv~d   23 (101)
T d3bn0a1          10 GRKHHPIYRIVVMD   23 (101)
T ss_dssp             EETTEEEEEEEEEE
T ss_pred             CCCCCCEEEEEEEE
T ss_conf             99899836899843


No 6  
>d1nh2d2 b.56.1.1 (D:55-121) Small chain TOA2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.94  E-value=1.1e+02  Score=12.07  Aligned_cols=16  Identities=19%  Similarity=0.590  Sum_probs=12.1

Q ss_pred             CCCCEEEEEEECCCEE
Q ss_conf             1464599999626627
Q 537021.9.peg.8   10 LHENFWLFFLKKDDFY   25 (38)
Q Consensus        10 lhenfwlfflkkddfy   25 (38)
                      .-+|-|-|.+|.-.|-
T Consensus        17 FCDnVWTFiiknv~fk   32 (67)
T d1nh2d2          17 FCDDVWTFIVKNCQVT   32 (67)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEEE
T ss_conf             0353778999506997


No 7  
>d1nvpd2 b.56.1.1 (D:54-99) Small chain TOA2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.81  E-value=1.4e+02  Score=11.58  Aligned_cols=15  Identities=33%  Similarity=0.875  Sum_probs=10.3

Q ss_pred             CCCCEEEEEEECCCE
Q ss_conf             146459999962662
Q 537021.9.peg.8   10 LHENFWLFFLKKDDF   24 (38)
Q Consensus        10 lhenfwlfflkkddf   24 (38)
                      .-+|-|-|.+|.-.|
T Consensus        14 fCDnVWTFilkdv~f   28 (46)
T d1nvpd2          14 FCDNVWTFVLNDVEF   28 (46)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             CCCCEEEEEEECEEE
T ss_conf             678587899936698


No 8  
>d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}
Probab=3.33  E-value=71  Score=13.17  Aligned_cols=16  Identities=25%  Similarity=0.436  Sum_probs=7.1

Q ss_pred             CCCEEEEEEEEEEEEE
Q ss_conf             2662799999998651
Q 537021.9.peg.8   21 KDDFYRIMVCVISLKT   36 (38)
Q Consensus        21 kddfyrimvcvislkt   36 (38)
                      .||+.--|+++||.+-
T Consensus        93 ~~Di~egl~aiiSvki  108 (167)
T d1s16a1          93 AEDIWDRCAYVLSVKM  108 (167)
T ss_dssp             HHHHHTTEEEEEEEEE
T ss_pred             HHHHHCCCEEEEEEEC
T ss_conf             8776177658987405


No 9  
>d2gnoa1 a.80.1.1 (A:209-306) gamma subunit {Thermotoga maritima [TaxId: 2336]}
Probab=3.08  E-value=1e+02  Score=12.37  Aligned_cols=6  Identities=83%  Similarity=1.630  Sum_probs=0.0

Q ss_pred             CCCCEE
Q ss_conf             146459
Q 537021.9.peg.8   10 LHENFW   15 (38)
Q Consensus        10 lhenfw   15 (38)
                      ||||-|
T Consensus        52 lhen~w   57 (98)
T d2gnoa1          52 LHENTW   57 (98)
T ss_dssp             HHTSCC
T ss_pred             CCCCCC
T ss_conf             102764


No 10 
>d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]}
Probab=2.95  E-value=1.2e+02  Score=11.87  Aligned_cols=20  Identities=30%  Similarity=0.360  Sum_probs=0.0

Q ss_pred             EECCCEEEEEEEEEEEEECC
Q ss_conf             96266279999999865169
Q 537021.9.peg.8   19 LKKDDFYRIMVCVISLKTNN   38 (38)
Q Consensus        19 lkkddfyrimvcvislktnn   38 (38)
                      +..||...-|.++||+|..+
T Consensus        90 i~~~Di~egl~~iiSvki~~  109 (172)
T d1kija1          90 PTGDDLLEGLYAVVSVKLPN  109 (172)
T ss_dssp             CCTTTTTTTEEEEEEEECSS
T ss_pred             CCHHHHHCCCEEEEEECCCC
T ss_conf             23889971310575502667


Done!