BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.851_1
         (38 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.851_1 
          Length = 38

 Score = 79.0 bits (193), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 38/38 (100%), Positives = 38/38 (100%)

Query: 1  MLLYDYILGLHENFWLFFLKKDDFYRIMVCVISLKTNN 38
          MLLYDYILGLHENFWLFFLKKDDFYRIMVCVISLKTNN
Sbjct: 1  MLLYDYILGLHENFWLFFLKKDDFYRIMVCVISLKTNN 38


>gi|254780836|ref|YP_003065249.1| putative type I restriction-modification system DNA methylase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 674

 Score = 20.8 bits (42), Expect = 4.0,   Method: Composition-based stats.
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 10  LHENFWLFFLK 20
           LH++FWL  LK
Sbjct: 510 LHQSFWLDILK 520


>gi|254780916|ref|YP_003065329.1| putative sigma-54-dependent transcription regulator protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 482

 Score = 20.4 bits (41), Expect = 5.5,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 19  LKKDDFYRIMVCVISLKT 36
            +KD +YRI V +I++ T
Sbjct: 294 FRKDLYYRISVFLINIST 311


>gi|254780240|ref|YP_003064653.1| adenylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 201

 Score = 20.4 bits (41), Expect = 6.2,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 4   YDYILGLHENFWLFFLKKDDFYRIMVCV 31
           YD  L   EN+    L    +YR M C+
Sbjct: 144 YDVFLKRIENYRKTILPLSSYYRDMGCL 171


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.336    0.152    0.502 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,485
Number of Sequences: 1233
Number of extensions: 644
Number of successful extensions: 6
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 38
length of database: 328,796
effective HSP length: 12
effective length of query: 26
effective length of database: 314,000
effective search space:  8164000
effective search space used:  8164000
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 31 (16.5 bits)