Query         537021.9.peg.852_1
Match_columns 38
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Wed May 25 00:40:48 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_852.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3igz_B Cofactor-independent ph   6.2 1.9E+02  0.0079   13.1   1.6   14    2-15    159-172 (561)
  2 3cqx_C BAG family molecular ch   5.4 1.7E+02   0.007   13.4   0.9   11   26-36     63-73  (88)
  3 3bua_E HSNM1B, DNA cross-LINK    5.0 1.8E+02  0.0075   13.3   0.8   19   16-35     16-34  (36)
  4 2a0a_A DER F 13; beta barrel,    3.4 3.1E+02   0.013   12.2   1.0   21   15-35     14-35  (131)
  5 1ka8_A Putative P4-specific DN   3.3   2E+02  0.0083   13.0  -0.0   18   10-27      1-18  (100)
  6 2rdd_B UPF0092 membrane protei   3.0 2.9E+02   0.012   12.3   0.5   21   17-37     13-34  (37)
  7 2g7b_A Cellular retinoic acid-   2.9 3.6E+02   0.015   11.9   1.7   22   15-36     13-35  (137)
  8 2fd4_A Avirulence protein AVRP   2.6 2.8E+02   0.012   12.3   0.1   18    8-25    104-121 (122)
  9 1fdq_A Fatty acid-binding prot   2.5 4.1E+02   0.017   11.6   1.6   22   15-36     14-36  (131)
 10 2q9s_A Fatty acid-binding prot   2.3 4.3E+02   0.018   11.5   1.6   19   16-34     39-58  (155)

No 1  
>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt, isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana} PDB: 3igy_B*
Probab=6.18  E-value=1.9e+02  Score=13.14  Aligned_cols=14  Identities=29%  Similarity=0.185  Sum_probs=11.1

Q ss_pred             EEEECCCCCCCCHH
Q ss_conf             78861865665410
Q 537021.9.peg.8    2 VFLFSDRRDTLPLR   15 (38)
Q Consensus         2 vflfsdrrdtlplr   15 (38)
                      +-+|.|-|||.|-.
T Consensus       159 lH~f~DGRDt~P~S  172 (561)
T 3igz_B          159 VHALYDGRDVPDGS  172 (561)
T ss_dssp             EEEEECSSSSCTTT
T ss_pred             EEEECCCCCCCCCC
T ss_conf             99840798888721


No 2  
>3cqx_C BAG family molecular chaperone regulator 2; protein-protein complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; 2.30A {Mus musculus} PDB: 3d0t_A
Probab=5.40  E-value=1.7e+02  Score=13.38  Aligned_cols=11  Identities=45%  Similarity=0.646  Sum_probs=8.6

Q ss_pred             CCCHHHHHHHH
Q ss_conf             22178887752
Q 537021.9.peg.8   26 NFDQRQIEKRL   36 (38)
Q Consensus        26 nfdqrqiekrl   36 (38)
                      -=||..|.|||
T Consensus        63 lDDQKkIKKRL   73 (88)
T 3cqx_C           63 LEDQKKIKRRL   73 (88)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             96389899999


No 3  
>3bua_E HSNM1B, DNA cross-LINK repair 1B protein; TRF2 TRFH domain dimerization domain apollo peptide, alternative splicing, cell cycle; HET: DNA; 2.50A {Homo sapiens}
Probab=4.97  E-value=1.8e+02  Score=13.26  Aligned_cols=19  Identities=42%  Similarity=0.478  Sum_probs=9.1

Q ss_pred             HHHHHHHHHCCCCHHHHHHH
Q ss_conf             07644557422217888775
Q 537021.9.peg.8   16 NFAEYFFLLVNFDQRQIEKR   35 (38)
Q Consensus        16 nfaeyffllvnfdqrqiekr   35 (38)
                      ||-.--|---|||| |+||-
T Consensus        16 ~f~qa~~SsR~FDq-QVEky   34 (36)
T 3bua_E           16 NFFQAGYSSRRFDQ-QVEKY   34 (36)
T ss_pred             HHHHHCCCCCCHHH-HHHHH
T ss_conf             89873323234689-99985


No 4  
>2a0a_A DER F 13; beta barrel, helix, allergen; NMR {Dermatophagoides farinae} SCOP: b.60.1.2
Probab=3.38  E-value=3.1e+02  Score=12.17  Aligned_cols=21  Identities=29%  Similarity=0.433  Sum_probs=16.5

Q ss_pred             HHHHHHHHHH-CCCCHHHHHHH
Q ss_conf             0076445574-22217888775
Q 537021.9.peg.8   15 RNFAEYFFLL-VNFDQRQIEKR   35 (38)
Q Consensus        15 rnfaeyffll-vnfdqrqiekr   35 (38)
                      -||.+|.-.+ |+++.|++.+.
T Consensus        14 ENfd~fLk~lGv~~~~Rk~a~~   35 (131)
T 2a0a_A           14 EKFDEFLDKLGVGFMVKTAAKT   35 (131)
T ss_dssp             CSHHHHHHHHTCCHHHHTGGGT
T ss_pred             CCHHHHHHHCCCCHHHHHHHHC
T ss_conf             4989999883999899876505


No 5  
>1ka8_A Putative P4-specific DNA primase; winged helix, transferase; 2.95A {Enterobacteria phage P4} SCOP: a.4.5.20
Probab=3.35  E-value=2e+02  Score=13.05  Aligned_cols=18  Identities=28%  Similarity=0.322  Sum_probs=10.8

Q ss_pred             CCCCHHHHHHHHHHHCCC
Q ss_conf             665410076445574222
Q 537021.9.peg.8   10 DTLPLRNFAEYFFLLVNF   27 (38)
Q Consensus        10 dtlplrnfaeyffllvnf   27 (38)
                      |+=||-.|+.||..+.+-
T Consensus         1 ~sDpL~dFc~yl~~~~~~   18 (100)
T 1ka8_A            1 DADPTFDFIGYLETLPQT   18 (100)
T ss_dssp             CCCHHHHHGGGEEECSSS
T ss_pred             CCCCHHHHHHHHHHCCCC
T ss_conf             986088899998816777


No 6  
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=3.01  E-value=2.9e+02  Score=12.30  Aligned_cols=21  Identities=14%  Similarity=0.411  Sum_probs=8.8

Q ss_pred             HHHHHHHHCC-CCHHHHHHHHC
Q ss_conf             7644557422-21788877525
Q 537021.9.peg.8   17 FAEYFFLLVN-FDQRQIEKRLM   37 (38)
Q Consensus        17 faeyffllvn-fdqrqiekrlm   37 (38)
                      |+-.+|++.. -.+||-|.+-|
T Consensus        13 f~ifYFliIRPQ~Kr~Ke~~~m   34 (37)
T 2rdd_B           13 GLIFYFMILRPQQKRTKEHKKL   34 (37)
T ss_dssp             HHHHHHHTHHHHHHHHHHHTTG
T ss_pred             HHHHHHHHHCCHHHHHHHHHHH
T ss_conf             9999999957017779999998


No 7  
>2g7b_A Cellular retinoic acid-binding protein 2; crabpii, retinoids, beta barrel, crystallography, X-RAY, high resolution, schiff base; HET: AZE; 1.18A {Homo sapiens} PDB: 3d97_A* 3fa8_A 3i17_B 3fa7_A* 3fa9_A 3d95_A 3cwk_A 3f8a_A* 3fep_A* 3fek_B 3fa6_A 1bm5_A 1xca_A 3fel_A* 3f9d_A* 3cr6_A* 3fen_A 1blr_A 1cbq_A* 1cbs_A* ...
Probab=2.94  E-value=3.6e+02  Score=11.89  Aligned_cols=22  Identities=32%  Similarity=0.309  Sum_probs=16.4

Q ss_pred             HHHHHHHHH-HCCCCHHHHHHHH
Q ss_conf             007644557-4222178887752
Q 537021.9.peg.8   15 RNFAEYFFL-LVNFDQRQIEKRL   36 (38)
Q Consensus        15 rnfaeyffl-lvnfdqrqiekrl   36 (38)
                      .||-||.-. =||+..|+|.+..
T Consensus        13 ENfdeyLk~lGv~~~~Rki~~~~   35 (137)
T 2g7b_A           13 ENFEELLKVLGVNVMLRKIAVAA   35 (137)
T ss_dssp             ECHHHHHHHTTCCHHHHHHHHHH
T ss_pred             CCHHHHHHHCCCCHHHHHHHHHC
T ss_conf             59899998829967999988725


No 8  
>2fd4_A Avirulence protein AVRPTOB; ring finger, U-BOX, ubiquitin ligase; 1.80A {Pseudomonas syringae}
Probab=2.62  E-value=2.8e+02  Score=12.35  Aligned_cols=18  Identities=44%  Similarity=0.683  Sum_probs=12.5

Q ss_pred             CCCCCCHHHHHHHHHHHC
Q ss_conf             656654100764455742
Q 537021.9.peg.8    8 RRDTLPLRNFAEYFFLLV   25 (38)
Q Consensus         8 rrdtlplrnfaeyffllv   25 (38)
                      .|++|.-+|.|.|-|-+|
T Consensus       104 nr~~L~a~nIa~yAFriV  121 (122)
T 2fd4_A          104 TRETLNAENIAKYAFRIV  121 (122)
T ss_dssp             TCCBCSTTTHHHHEEEEE
T ss_pred             CCCCCCHHHHHHHEEECC
T ss_conf             567665353443222406


No 9  
>1fdq_A Fatty acid-binding protein, brain; omega-3, long chain poly unsaturated fatty acid, lipid binding protein; HET: HXA; 2.10A {Homo sapiens} SCOP: b.60.1.2 PDB: 1fe3_A* 1jjx_A
Probab=2.46  E-value=4.1e+02  Score=11.60  Aligned_cols=22  Identities=41%  Similarity=0.640  Sum_probs=16.8

Q ss_pred             HHHHHHHHHH-CCCCHHHHHHHH
Q ss_conf             0076445574-222178887752
Q 537021.9.peg.8   15 RNFAEYFFLL-VNFDQRQIEKRL   36 (38)
Q Consensus        15 rnfaeyffll-vnfdqrqiekrl   36 (38)
                      -||-+|.--+ |++..|++.+..
T Consensus        14 eNfd~fLk~lGv~~~~Rk~a~~~   36 (131)
T 1fdq_A           14 QNFDEYMKALGVGFATRQVGNVT   36 (131)
T ss_dssp             ESHHHHHHHTTCCHHHHHHHHHC
T ss_pred             CCHHHHHHHCCCCHHHHHHHHCC
T ss_conf             49899998839998999875058


No 10 
>2q9s_A Fatty acid-binding protein; beta clamshell, lipid binding protein; HET: EIC; 2.30A {Mus musculus} SCOP: b.60.1.2 PDB: 2qm9_A*
Probab=2.33  E-value=4.3e+02  Score=11.51  Aligned_cols=19  Identities=32%  Similarity=0.649  Sum_probs=0.0

Q ss_pred             HHHHHHHHH-CCCCHHHHHH
Q ss_conf             076445574-2221788877
Q 537021.9.peg.8   16 NFAEYFFLL-VNFDQRQIEK   34 (38)
Q Consensus        16 nfaeyffll-vnfdqrqiek   34 (38)
                      ||-||+--+ |++..|++.+
T Consensus        39 NfdefLkalGV~~~~Rk~a~   58 (155)
T 2q9s_A           39 NFDDYMKEVGVGFATRKVAG   58 (155)
T ss_dssp             SHHHHHHHHTCCHHHHHHHH
T ss_pred             CHHHHHHHCCCCHHHHHHHH
T ss_conf             98999988499989998887


Done!