Query         537021.9.peg.869_1
Match_columns 39
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed May 25 04:29:30 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_869.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2qho_B E3 ubiquitin-protein l  21.9      39  0.0012   17.1   1.3   31    9-39     11-47  (53)
  2 >1h2w_A Prolyl endopeptidase;   19.6      37  0.0011   17.3   0.8   17   20-36     21-37  (323)
  3 >1vq8_P 50S ribosomal protein   19.3      41  0.0012   17.0   0.9   21   19-39     31-51  (68)
  4 >3jyw_P 60S ribosomal protein   14.6      58  0.0017   16.2   0.8   21   19-39     31-51  (96)
  5 >2zkr_p 60S ribosomal protein   13.3      66   0.002   15.9   0.8   20   19-38     55-74  (83)
  6 >3bu8_A Telomeric repeat-bindi  10.9 1.1E+02  0.0032   14.8   1.3   14   10-23     34-47  (95)
  7 >1in0_A YAJQ protein, HI1034;    9.9 1.1E+02  0.0033   14.8   1.0   17   11-27     48-64  (91)
  8 >2x1g_F Cadmus; transport prot   9.0      98  0.0029   15.1   0.4   15    2-16     89-103 (127)
  9 >1ehs_A STB, heat-stable enter   9.0 1.3E+02   0.004   14.4   1.1   12    6-17      8-19  (48)
 10 >1w2l_A Cytochrome oxidase sub   7.0 1.4E+02  0.0041   14.3   0.4   16    4-20     14-29  (64)

No 1  
>>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens} (B:)
Probab=21.87  E-value=39  Score=17.13  Aligned_cols=31  Identities=42%  Similarity=0.463  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHCCCHHHCCHHHHH------HHHHHCCC
Q ss_conf             79999999960501335025664------45542249
Q 537021.9.peg.8    9 DCYRQIEDILQGKIAKCPVRGLY------NKAKNNLL   39 (39)
Q Consensus         9 dcyrqiedilqgkiakcpvrgly------nkaknnll   39 (39)
                      |-..|..-.||||-...-+|.|-      |-|-||||
T Consensus        11 ~Li~q~q~VLQgKSR~vIiRELQrtnLdVN~AVNNLL   47 (53)
T 2qho_B           11 ELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLL   47 (53)
T ss_dssp             HHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             9999999999553289999999981763999998874


No 2  
>>1h2w_A Prolyl endopeptidase; hydrolase, prolyl oligopeptidase, amnesia, alpha/ beta- hydrolase, beta-propeller, serine protease; 1.39A {Sus scrofa} (A:32-72,A:429-710)
Probab=19.62  E-value=37  Score=17.25  Aligned_cols=17  Identities=35%  Similarity=0.886  Sum_probs=12.0

Q ss_pred             CCHHHCCHHHHHHHHHH
Q ss_conf             50133502566445542
Q 537021.9.peg.8   20 GKIAKCPVRGLYNKAKN   36 (39)
Q Consensus        20 gkiakcpvrglynkakn   36 (39)
                      --+..||+||||...-.
T Consensus        21 ~~~~~~~~~~~~~~~~~   37 (323)
T 1h2w_A           21 PFLEQCPIRGLYKERMT   37 (323)
T ss_dssp             HHHHSSTHHHHHHHHHH
T ss_pred             HHHCCCCHHHHHHHHHH
T ss_conf             99837807899999998


No 3  
>>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (P:82-149)
Probab=19.29  E-value=41  Score=17.04  Aligned_cols=21  Identities=29%  Similarity=0.548  Sum_probs=18.4

Q ss_pred             CCCHHHCCHHHHHHHHHHCCC
Q ss_conf             050133502566445542249
Q 537021.9.peg.8   19 QGKIAKCPVRGLYNKAKNNLL   39 (39)
Q Consensus        19 qgkiakcpvrglynkaknnll   39 (39)
                      .|+|.+---|-||.+||.|..
T Consensus        31 ~~kId~~~Yr~lY~kaKGn~F   51 (68)
T 1vq8_P           31 EGTLSSSQYRDLYDKAGGGEF   51 (68)
T ss_dssp             TTSSCHHHHHHHHHHHTTTCC
T ss_pred             CCCCCHHHHHHHHHHHCCCCC
T ss_conf             489889999999999528862


No 4  
>>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} (P:81-176)
Probab=14.60  E-value=58  Score=16.25  Aligned_cols=21  Identities=38%  Similarity=0.512  Sum_probs=18.1

Q ss_pred             CCCHHHCCHHHHHHHHHHCCC
Q ss_conf             050133502566445542249
Q 537021.9.peg.8   19 QGKIAKCPVRGLYNKAKNNLL   39 (39)
Q Consensus        19 qgkiakcpvrglynkaknnll   39 (39)
                      .|+|.+---|-||.++|.|..
T Consensus        31 ~~kID~~~Yr~LY~kaKGn~F   51 (96)
T 3jyw_P           31 AGKIDKHLYHVLYKESKGNAF   51 (96)
T ss_dssp             TTSSCSTTTTTTGGGTTTTCC
T ss_pred             CCCCCHHHHHHHHHHHCCCCC
T ss_conf             489899999999999418751


No 5  
>>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (p:58-140)
Probab=13.28  E-value=66  Score=15.94  Aligned_cols=20  Identities=35%  Similarity=0.438  Sum_probs=17.8

Q ss_pred             CCCHHHCCHHHHHHHHHHCC
Q ss_conf             05013350256644554224
Q 537021.9.peg.8   19 QGKIAKCPVRGLYNKAKNNL   38 (39)
Q Consensus        19 qgkiakcpvrglynkaknnl   38 (39)
                      .|+|.+---+-||.++|.|.
T Consensus        55 ~~kid~~~Yr~lY~kaKGn~   74 (83)
T 2zkr_p           55 SKKIDRHMYHSLYLKVKGNV   74 (83)
T ss_dssp             TTSSCHHHHHHHHHHHHTC-
T ss_pred             CCCCCHHHHHHHHHHCCCCE
T ss_conf             58867899999998725882


No 6  
>>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} (A:1-49,A:190-235)
Probab=10.95  E-value=1.1e+02  Score=14.81  Aligned_cols=14  Identities=43%  Similarity=0.695  Sum_probs=10.6

Q ss_pred             HHHHHHHHHCCCHH
Q ss_conf             99999999605013
Q 537021.9.peg.8   10 CYRQIEDILQGKIA   23 (39)
Q Consensus        10 cyrqiedilqgkia   23 (39)
                      -+|||.||+|.-..
T Consensus        34 DF~qiRDImqalLV   47 (95)
T 3bu8_A           34 DFRQIRDIMQALLV   47 (95)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999983


No 7  
>>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} (A:11-101)
Probab=9.90  E-value=1.1e+02  Score=14.77  Aligned_cols=17  Identities=29%  Similarity=0.380  Sum_probs=13.6

Q ss_pred             HHHHHHHHCCCHHHCCH
Q ss_conf             99999996050133502
Q 537021.9.peg.8   11 YRQIEDILQGKIAKCPV   27 (39)
Q Consensus        11 yrqiedilqgkiakcpv   27 (39)
                      -+|+.|||.+|.+|.-+
T Consensus        48 l~qv~diL~~kl~KRgi   64 (91)
T 1in0_A           48 LEQLIEILIGSCIKRGI   64 (91)
T ss_dssp             HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHCCC
T ss_conf             99999999999874489


No 8  
>>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} (F:620-746)
Probab=9.03  E-value=98  Score=15.06  Aligned_cols=15  Identities=33%  Similarity=0.488  Sum_probs=10.9

Q ss_pred             EEHHHHHHHHHHHHH
Q ss_conf             322667579999999
Q 537021.9.peg.8    2 IVLEKACDCYRQIED   16 (39)
Q Consensus         2 ivlekacdcyrqied   16 (39)
                      .+.|..|.|+|+.-.
T Consensus        89 ~i~E~~cr~lr~ai~  103 (127)
T 2x1g_F           89 DVLEAACSAMKHAIT  103 (127)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999999


No 9  
>>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} (A:)
Probab=8.96  E-value=1.3e+02  Score=14.35  Aligned_cols=12  Identities=42%  Similarity=0.811  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             675799999999
Q 537021.9.peg.8    6 KACDCYRQIEDI   17 (39)
Q Consensus         6 kacdcyrqiedi   17 (39)
                      .-|.-||||..-
T Consensus         8 dlcehyrqiake   19 (48)
T 1ehs_A            8 DLCEHYRQIAKE   19 (48)
T ss_dssp             SSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             899999999999


No 10 
>>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus} (A:1-18,A:54-99)
Probab=7.01  E-value=1.4e+02  Score=14.30  Aligned_cols=16  Identities=56%  Similarity=0.827  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHHHCC
Q ss_conf             26675799999999605
Q 537021.9.peg.8    4 LEKACDCYRQIEDILQG   20 (39)
Q Consensus         4 lekacdcyrqiedilqg   20 (39)
                      -||||+-|-. |.|++-
T Consensus        14 ~~~~~EaYLr-eSIl~P   29 (64)
T 1w2l_A           14 REKACENYLR-ESILQP   29 (64)
T ss_dssp             HHTSGHHHHH-HHHHST
T ss_pred             HHCCCHHHHH-HHHHHH
T ss_conf             3086399999-999866


Done!