RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= 537021.9.peg.869_1 (39 letters) >2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A* Length = 759 Score = 26.3 bits (58), Expect = 1.8 Identities = 5/25 (20%), Positives = 10/25 (40%) Query: 4 LEKACDCYRQIEDILQGKIAKCPVR 28 + + +R I D G A+ + Sbjct: 416 VTHIANEFRDIHDRTGGVAAEGELN 440 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.325 0.142 0.433 Gapped Lambda K H 0.267 0.0640 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 331,134 Number of extensions: 7758 Number of successful extensions: 17 Number of sequences better than 10.0: 1 Number of HSP's gapped: 17 Number of HSP's successfully gapped: 1 Length of query: 39 Length of database: 5,693,230 Length adjustment: 13 Effective length of query: 26 Effective length of database: 5,378,058 Effective search space: 139829508 Effective search space used: 139829508 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 50 (23.2 bits)