RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.869_1
         (39 letters)



>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel,
           glycosyltransferase, transferase; HET: NDG; 1.85A
           {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A*
           2zuw_A*
          Length = 759

 Score = 26.3 bits (58), Expect = 1.8
 Identities = 5/25 (20%), Positives = 10/25 (40%)

Query: 4   LEKACDCYRQIEDILQGKIAKCPVR 28
           +    + +R I D   G  A+  + 
Sbjct: 416 VTHIANEFRDIHDRTGGVAAEGELN 440


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.325    0.142    0.433 

Gapped
Lambda     K      H
   0.267   0.0640    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 331,134
Number of extensions: 7758
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 39
Length of database: 5,693,230
Length adjustment: 13
Effective length of query: 26
Effective length of database: 5,378,058
Effective search space: 139829508
Effective search space used: 139829508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.2 bits)