Query 537021.9.peg.873_1 Match_columns 41 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 04:16:16 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_873.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3ir2_A DNA DC->DU-editing enzy 13.6 82 0.0035 14.2 2.1 18 17-34 92-109 (207) 2 2nyt_A Probable C->U-editing e 10.6 1E+02 0.0043 13.8 1.8 17 18-34 76-92 (190) 3 2dew_X Protein-arginine deimin 10.3 46 0.002 15.5 -0.0 17 11-27 410-426 (671) 4 3bf4_A Ethyl TERT-butyl ether 7.3 1.5E+02 0.0061 13.0 1.5 20 20-39 71-90 (127) 5 1x93_A Hypothetical protein HP 6.0 73 0.0031 14.5 -0.6 11 3-13 39-49 (55) 6 3mtx_A Protein MD-1; LY86, RP1 5.4 1.9E+02 0.008 12.4 2.2 29 12-40 116-145 (151) 7 1eg1_A Endoglucanase I; mutati 4.9 2.1E+02 0.0087 12.2 1.4 18 18-35 242-260 (371) 8 2a7y_A Hypothetical protein RV 4.6 2.1E+02 0.0088 12.2 1.0 11 19-29 34-44 (83) 9 1laj_A Capsid protein; anti-pa 4.5 2.2E+02 0.0094 12.1 1.2 20 16-35 108-127 (217) 10 1ojj_A Endoglucanase I; hydrol 3.8 2.6E+02 0.011 11.8 1.3 18 15-32 255-274 (402) No 1 >3ir2_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrolase, metal-binding, zinc, alternative splicing, cytoplasm; HET: DNA; 2.25A {Homo sapiens} PDB: 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A* Probab=13.58 E-value=82 Score=14.22 Aligned_cols=18 Identities=39% Similarity=0.796 Sum_probs=13.6 Q ss_pred EEECCCCCEEEEEEEEEC Q ss_conf 896289980799999951 Q 537021.9.peg.8 17 LKLNTSPPYTVTCFLTFE 34 (41) Q Consensus 17 lklntsppytvtcfltfe 34 (41) .+|..+--|.||||++.- T Consensus 92 ~~ld~~~~Y~VTwy~SwS 109 (207) T 3ir2_A 92 WKLDLDQDYRVTCFTSWS 109 (207) T ss_dssp GCCCTTSCEEEEEEEEEC T ss_pred CCCCCCCCEEEEEEEECC T ss_conf 167945437898877369 No 2 >2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A Probab=10.57 E-value=1e+02 Score=13.77 Aligned_cols=17 Identities=18% Similarity=0.409 Sum_probs=12.5 Q ss_pred EECCCCCEEEEEEEEEC Q ss_conf 96289980799999951 Q 537021.9.peg.8 18 KLNTSPPYTVTCFLTFE 34 (41) Q Consensus 18 klntsppytvtcfltfe 34 (41) .|..+--|.||||++.- T Consensus 76 ~l~p~~~y~VTwy~SWS 92 (190) T 2nyt_A 76 AFDPALRYNVTWYVSSS 92 (190) T ss_dssp CCCTTCEEEEEEEEEEC T ss_pred HCCCCCEEEEEEEEECC T ss_conf 24977549999997449 No 3 >2dew_X Protein-arginine deiminase type IV; histone modification enzyme, hydrolase; 2.10A {Homo sapiens} SCOP: b.2.9.1 b.6.1.6 d.126.1.5 PDB: 2dex_X 2dey_X 2dw5_A* 1wda_A* 1wd9_A* 1wd8_A Probab=10.31 E-value=46 Score=15.45 Aligned_cols=17 Identities=47% Similarity=0.573 Sum_probs=11.1 Q ss_pred CCCCCEEEECCCCCEEE Q ss_conf 21121689628998079 Q 537021.9.peg.8 11 STIDGKLKLNTSPPYTV 27 (41) Q Consensus 11 stidgklklntsppytv 27 (41) +++|.-=.|.+||||++ T Consensus 410 ~sLDSfGNLEvsPPvt~ 426 (671) T 2dew_X 410 SGLDSFGNLEVSPPVTV 426 (671) T ss_dssp CGGGSGGGEEECCSEEE T ss_pred CCCCCCCCCCCCCCCCC T ss_conf 20113576055798013 No 4 >3bf4_A Ethyl TERT-butyl ether degradation ETHD protein; YP_299883.1, ETHD-like protein, structural genomics; 2.10A {Ralstonia eutropha JMP134} Probab=7.33 E-value=1.5e+02 Score=12.98 Aligned_cols=20 Identities=15% Similarity=0.615 Sum_probs=15.8 Q ss_pred CCCCCEEEEEEEEECCCCCC Q ss_conf 28998079999995154554 Q 537021.9.peg.8 20 NTSPPYTVTCFLTFENATDY 39 (41) Q Consensus 20 ntsppytvtcfltfenatdy 39 (41) ...|||-+-|-+.|++..+. T Consensus 71 ~~~p~y~~iael~Fds~eal 90 (127) T 3bf4_A 71 GAPPAFVAMCAFICDSAENF 90 (127) T ss_dssp TCCCSEEEEEEEEESCHHHH T ss_pred CCCCCEEEEEEEEECCHHHH T ss_conf 99987799999999999999 No 5 >1x93_A Hypothetical protein HP0222; JHP0208, transcription, regulator, ARC, METJ, MNT, PArg, COPG, REPA; NMR {Helicobacter pylori 26695} SCOP: a.43.1.3 Probab=6.03 E-value=73 Score=14.47 Aligned_cols=11 Identities=55% Similarity=0.649 Sum_probs=7.6 Q ss_pred EEEEEEEECCC Q ss_conf 46676420211 Q 537021.9.peg.8 3 VRAIEMRQSTI 13 (41) Q Consensus 3 vraiemrqsti 13 (41) .|.||||.|.- T Consensus 39 lrkiemrgshh 49 (55) T 1x93_A 39 LRKIEMRGSHH 49 (55) T ss_dssp HTCCC------ T ss_pred HHHHHHCCCCC T ss_conf 99988427634 No 6 >3mtx_A Protein MD-1; LY86, RP105 associated protein, immune system; HET: PGT PGE; 2.00A {Gallus gallus} PDB: 3mu3_A* Probab=5.38 E-value=1.9e+02 Score=12.41 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=17.3 Q ss_pred CCCCEEEECCCCCEEEEEE-EEECCCCCCC Q ss_conf 1121689628998079999-9951545547 Q 537021.9.peg.8 12 TIDGKLKLNTSPPYTVTCF-LTFENATDYN 40 (41) Q Consensus 12 tidgklklntsppytvtcf-ltfenatdyn 40 (41) ....+..|-..---.++|| .+.+|--||| T Consensus 116 ~y~v~~~l~~~~~~~i~C~~~~Ik~~~~~~ 145 (151) T 3mtx_A 116 DYTITARLTNEDRATVACADFTVKNYLDYS 145 (151) T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEECC--- T ss_pred EEEEEEEEECCCCCEEEEEEEECCCCCCCC T ss_conf 799999999499999999998643057766 No 7 >1eg1_A Endoglucanase I; mutation, cellulose degradation; HET: NAG; 3.60A {Hypocrea jecorina} SCOP: b.29.1.10 Probab=4.88 E-value=2.1e+02 Score=12.23 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=12.9 Q ss_pred EECCCCCEEE-EEEEEECC Q ss_conf 9628998079-99999515 Q 537021.9.peg.8 18 KLNTSPPYTV-TCFLTFEN 35 (41) Q Consensus 18 klntsppytv-tcfltfen 35 (41) +++|+-|+|| |-|++-.+ T Consensus 242 tVDT~k~fTVVTQFit~~~ 260 (371) T 1eg1_A 242 TVDTSKTFTIITQFNTDNG 260 (371) T ss_dssp SSCTTSCEEEEEEEEETTS T ss_pred CCCCCCCEEEEEEEECCCC T ss_conf 3436896599998764899 No 8 >2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3 Probab=4.58 E-value=2.1e+02 Score=12.21 Aligned_cols=11 Identities=45% Similarity=0.827 Sum_probs=8.0 Q ss_pred ECCCCCEEEEE Q ss_conf 62899807999 Q 537021.9.peg.8 19 LNTSPPYTVTC 29 (41) Q Consensus 19 lntsppytvtc 29 (41) -+-+|||.|-- T Consensus 34 ~dG~PPY~VRw 44 (83) T 2a7y_A 34 ADGSPPYVVRW 44 (83) T ss_dssp SSSCSCEEEEE T ss_pred CCCCCCEEEEE T ss_conf 99999989885 No 9 >1laj_A Capsid protein; anti-parallel beta sheets, jelly roll, T=3 icosahedral virus, protein-RNA complex, disulphide bridge, icosahedral virus; 3.40A {Tomato aspermy virus} SCOP: b.121.4.5 Probab=4.48 E-value=2.2e+02 Score=12.07 Aligned_cols=20 Identities=25% Similarity=0.645 Sum_probs=16.6 Q ss_pred EEEECCCCCEEEEEEEEECC Q ss_conf 68962899807999999515 Q 537021.9.peg.8 16 KLKLNTSPPYTVTCFLTFEN 35 (41) Q Consensus 16 klklntsppytvtcfltfen 35 (41) ++.||-+|-+.-||+++... T Consensus 108 q~rlNP~pkfdstvwVtvRk 127 (217) T 1laj_A 108 QVRLNPSPKFNSTIWVSLRR 127 (217) T ss_dssp EEEEEECTTCCCCEEEEEEC T ss_pred EEECCCCCCCCCCEEEEEEE T ss_conf 85237885557623699983 No 10 >1ojj_A Endoglucanase I; hydrolase, cellulose degradation, glycosynthase; HET: BGC GAL GLC NAG; 1.4A {Humicola insolens} SCOP: b.29.1.10 PDB: 1oji_A* 1ojk_A* 1dym_A* 1a39_A* 2a39_A* Probab=3.78 E-value=2.6e+02 Score=11.77 Aligned_cols=18 Identities=56% Similarity=0.901 Sum_probs=0.0 Q ss_pred CE-EEECCCCCEEE-EEEEE Q ss_conf 16-89628998079-99999 Q 537021.9.peg.8 15 GK-LKLNTSPPYTV-TCFLT 32 (41) Q Consensus 15 gk-lklntsppytv-tcflt 32 (41) || ++++|+-|+|| |-|++ T Consensus 255 G~~~tVDT~k~fTVVTQFi~ 274 (402) T 1ojj_A 255 GEEFKVNTLKPFTVVTQFLA 274 (402) T ss_dssp STTSSEETTSCEEEEEEEEE T ss_pred CCCEEECCCCCEEEEEEEEC T ss_conf 86603058986699998872 Done!