Query 537021.9.peg.874_1
Match_columns 47
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed May 25 08:39:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_874.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kfd_A PRE-mRNA-processing pro 37.6 8.7 0.00037 18.8 1.0 14 9-22 13-26 (69)
2 2hjn_A MPS1 binder 1, maintena 10.2 95 0.004 13.5 1.5 13 13-25 173-185 (236)
3 1pya_A Pyruvoyl-dependent hist 10.0 78 0.0033 14.0 1.0 12 31-42 54-65 (81)
4 1pi1_A MOB1A; mitotic EXIT net 9.6 1E+02 0.0043 13.3 1.5 12 14-25 121-132 (185)
5 3ig3_A Plxna3 protein; plexin 8.4 1.2E+02 0.0051 13.0 1.7 25 2-26 529-553 (627)
6 3hm6_X Plexin-B1; structural g 8.0 1.3E+02 0.0053 12.9 1.7 25 2-26 543-567 (644)
7 2e0n_A Precorrin-2 C20-methylt 7.8 9.9 0.00041 18.5 -4.3 11 7-17 221-231 (259)
8 2pwo_A GAG-POL polyprotein (PR 7.1 84 0.0035 13.8 0.2 44 2-45 29-86 (146)
9 2oqm_A Hypothetical protein; s 6.3 1.6E+02 0.0065 12.4 2.6 29 8-36 12-44 (192)
10 3odh_A Okrai endonuclease; alp 5.2 1.6E+02 0.0068 12.3 0.8 12 4-15 144-156 (194)
No 1
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=37.65 E-value=8.7 Score=18.82 Aligned_cols=14 Identities=43% Similarity=0.733 Sum_probs=11.8
Q ss_pred HCCHHHHHHHHHHH
Q ss_conf 38069999999999
Q 537021.9.peg.8 9 EIPYFSLMLYRVYH 22 (47)
Q Consensus 9 eipyfslmlyrvyh 22 (47)
.--||.|||-|||.
T Consensus 13 kK~yF~LlL~Rvy~ 26 (69)
T 2kfd_A 13 KKHYFWLLLQRTYT 26 (69)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999982
No 2
>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=10.21 E-value=95 Score=13.51 Aligned_cols=13 Identities=46% Similarity=0.692 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999972
Q 537021.9.peg.8 13 FSLMLYRVYHHIH 25 (47)
Q Consensus 13 fslmlyrvyhhih 25 (47)
.--.|||||-||-
T Consensus 173 I~rRLfRVyAHiY 185 (236)
T 2hjn_A 173 ILRRLFRVYAHIY 185 (236)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999889
No 3
>1pya_A Pyruvoyl-dependent histidine decarboxylase (L- histidine carboxylase); carboxy-lyase; 2.50A {Lactobacillus SP} SCOP: d.155.1.1 PDB: 1hq6_A 1ibv_A* 1ibu_A 1ibt_A* 1ibw_A*
Probab=9.96 E-value=78 Score=13.97 Aligned_cols=12 Identities=50% Similarity=0.653 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHE
Q ss_conf 999986210030
Q 537021.9.peg.8 31 ILQKEIVSYDRT 42 (47)
Q Consensus 31 ilqkeivsydrt 42 (47)
-+-..||||||.
T Consensus 54 ~~ld~IvsyDRa 65 (81)
T 1pya_A 54 DVLDGIVSYDRA 65 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHCEEEECHH
T ss_conf 122050320213
No 4
>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo sapiens} SCOP: a.29.7.1 PDB: 1r3b_A
Probab=9.61 E-value=1e+02 Score=13.33 Aligned_cols=12 Identities=50% Similarity=0.725 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999972
Q 537021.9.peg.8 14 SLMLYRVYHHIH 25 (47)
Q Consensus 14 slmlyrvyhhih 25 (47)
--.|+|||-||-
T Consensus 121 ~rrLfRVyAHiY 132 (185)
T 1pi1_A 121 LKRLFRVYAHIY 132 (185)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 5
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembrane, membrane protein, signaling protein; 1.99A {Mus musculus}
Probab=8.43 E-value=1.2e+02 Score=12.97 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=22.2
Q ss_pred CHHCCHHHCCHHHHHHHHHHHHHHC
Q ss_conf 1000744380699999999999720
Q 537021.9.peg.8 2 DKLLNAEEIPYFSLMLYRVYHHIHR 26 (47)
Q Consensus 2 dkllnaeeipyfslmlyrvyhhihr 26 (47)
.|||-|.|||-+--|.-+-|..|..
T Consensus 529 nKLLYAkdIP~Yk~~V~~YY~~I~~ 553 (627)
T 3ig3_A 529 NKLLYAKDIPNYKSWVERYYRDIAK 553 (627)
T ss_dssp HHHHTTTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 0036243248999999999999983
No 6
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, coiled coil; 2.40A {Homo sapiens}
Probab=7.99 E-value=1.3e+02 Score=12.87 Aligned_cols=25 Identities=40% Similarity=0.677 Sum_probs=22.3
Q ss_pred CHHCCHHHCCHHHHHHHHHHHHHHC
Q ss_conf 1000744380699999999999720
Q 537021.9.peg.8 2 DKLLNAEEIPYFSLMLYRVYHHIHR 26 (47)
Q Consensus 2 dkllnaeeipyfslmlyrvyhhihr 26 (47)
.|||-|.|||-+--|.-|-|..|..
T Consensus 543 nKLLYAkdIp~Yk~~V~~YY~~I~~ 567 (644)
T 3hm6_X 543 NKLLYARDIPRYKRMVERYYADIRQ 567 (644)
T ss_dssp HHHHTTTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 0036343248999999999999983
No 7
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S- adenosylmethionine; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=7.84 E-value=9.9 Score=18.55 Aligned_cols=11 Identities=55% Similarity=1.171 Sum_probs=5.6
Q ss_pred HHHCCHHHHHH
Q ss_conf 44380699999
Q 537021.9.peg.8 7 AEEIPYFSLML 17 (47)
Q Consensus 7 aeeipyfslml 17 (47)
.+++||||+|+
T Consensus 221 ~~~~~y~Slvi 231 (259)
T 2e0n_A 221 SRAIPYFSLLV 231 (259)
T ss_dssp SCCCCSSEEEE
T ss_pred CCCCCCCEEEE
T ss_conf 78799767999
No 8
>2pwo_A GAG-POL polyprotein (PR160GAG-POL); viral capsid, HIV-1, anti-viral, viral protein; 1.45A {Human immunodeficiency virus 1} PDB: 2pwm_A 2gon_A 1afv_A 1gwp_A 2pxr_C 2gol_B 1m9c_C 2x83_A 2x2d_D* 1ak4_C 2jpr_A* 1m9e_C 1m9y_C 1m9f_C 1m9x_C 1m9d_C 1fgl_B
Probab=7.10 E-value=84 Score=13.79 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=24.8
Q ss_pred CHHCCHHHCCHHHHH-----HHHHHHHHHCCHH---------HHHHHHHHHHHHEEEE
Q ss_conf 100074438069999-----9999999720117---------8999986210030343
Q 537021.9.peg.8 2 DKLLNAEEIPYFSLM-----LYRVYHHIHRDNA---------HILQKEIVSYDRTLMV 45 (47)
Q Consensus 2 dkllnaeeipyfslm-----lyrvyhhihrdna---------hilqkeivsydrtlmv 45 (47)
+|.+++|-||.||-. -|+.-+.+.--.. .++.+|.-.|||+--+
T Consensus 29 Ek~f~pEvIpmFsALSegatP~DlN~mLn~vgghqaamQ~lkd~InEeaaewDr~HP~ 86 (146)
T 2pwo_A 29 EKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPV 86 (146)
T ss_dssp HHTTSTTHHHHHHHHTTTCCHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 6057821206899971898759899999864672889999999987999987046998
No 9
>2oqm_A Hypothetical protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.83A {Shewanella denitrificans} SCOP: a.213.1.3
Probab=6.32 E-value=1.6e+02 Score=12.42 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=21.8
Q ss_pred HHCCHHHHHHHH----HHHHHHCCHHHHHHHHH
Q ss_conf 438069999999----99997201178999986
Q 537021.9.peg.8 8 EEIPYFSLMLYR----VYHHIHRDNAHILQKEI 36 (47)
Q Consensus 8 eeipyfslmlyr----vyhhihrdnahilqkei 36 (47)
.|--||.+|||. +|-++-+.-.++|+|--
T Consensus 12 ~~~~~~~~~LYd~sVp~f~q~L~~l~~iL~Kae 44 (192)
T 2oqm_A 12 HENLYFQGMLYDLTVVQFSKMLKNLNAIFDKAE 44 (192)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999987499779999999999999999999
No 10
>3odh_A Okrai endonuclease; alpha and beta proteins (A/B), restriction endonuclease-like phosphodiesterase; HET: DNA; 2.30A {Oceanobacter kriegii}
Probab=5.21 E-value=1.6e+02 Score=12.32 Aligned_cols=12 Identities=50% Similarity=0.739 Sum_probs=6.3
Q ss_pred HCCHHH-CCHHHH
Q ss_conf 007443-806999
Q 537021.9.peg.8 4 LLNAEE-IPYFSL 15 (47)
Q Consensus 4 llnaee-ipyfsl 15 (47)
.-|-+| -|||++
T Consensus 144 iGnf~ELepYF~~ 156 (194)
T 3odh_A 144 VGNFRELEPYFSV 156 (194)
T ss_dssp BCCHHHHGGGHHH
T ss_pred CCCHHHCCCCHHH
T ss_conf 4776650632467
Done!