Query 537021.9.peg.874_1 Match_columns 47 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 08:39:27 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_874.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2kfd_A PRE-mRNA-processing pro 37.6 8.7 0.00037 18.8 1.0 14 9-22 13-26 (69) 2 2hjn_A MPS1 binder 1, maintena 10.2 95 0.004 13.5 1.5 13 13-25 173-185 (236) 3 1pya_A Pyruvoyl-dependent hist 10.0 78 0.0033 14.0 1.0 12 31-42 54-65 (81) 4 1pi1_A MOB1A; mitotic EXIT net 9.6 1E+02 0.0043 13.3 1.5 12 14-25 121-132 (185) 5 3ig3_A Plxna3 protein; plexin 8.4 1.2E+02 0.0051 13.0 1.7 25 2-26 529-553 (627) 6 3hm6_X Plexin-B1; structural g 8.0 1.3E+02 0.0053 12.9 1.7 25 2-26 543-567 (644) 7 2e0n_A Precorrin-2 C20-methylt 7.8 9.9 0.00041 18.5 -4.3 11 7-17 221-231 (259) 8 2pwo_A GAG-POL polyprotein (PR 7.1 84 0.0035 13.8 0.2 44 2-45 29-86 (146) 9 2oqm_A Hypothetical protein; s 6.3 1.6E+02 0.0065 12.4 2.6 29 8-36 12-44 (192) 10 3odh_A Okrai endonuclease; alp 5.2 1.6E+02 0.0068 12.3 0.8 12 4-15 144-156 (194) No 1 >2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae} Probab=37.65 E-value=8.7 Score=18.82 Aligned_cols=14 Identities=43% Similarity=0.733 Sum_probs=11.8 Q ss_pred HCCHHHHHHHHHHH Q ss_conf 38069999999999 Q 537021.9.peg.8 9 EIPYFSLMLYRVYH 22 (47) Q Consensus 9 eipyfslmlyrvyh 22 (47) .--||.|||-|||. T Consensus 13 kK~yF~LlL~Rvy~ 26 (69) T 2kfd_A 13 KKHYFWLLLQRTYT 26 (69) T ss_dssp HHHHHHHHHHHHSC T ss_pred HHHHHHHHHHHHHC T ss_conf 99999999999982 No 2 >2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell cycle; 2.00A {Saccharomyces cerevisiae} Probab=10.21 E-value=95 Score=13.51 Aligned_cols=13 Identities=46% Similarity=0.692 Sum_probs=9.1 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999972 Q 537021.9.peg.8 13 FSLMLYRVYHHIH 25 (47) Q Consensus 13 fslmlyrvyhhih 25 (47) .--.|||||-||- T Consensus 173 I~rRLfRVyAHiY 185 (236) T 2hjn_A 173 ILRRLFRVYAHIY 185 (236) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999889 No 3 >1pya_A Pyruvoyl-dependent histidine decarboxylase (L- histidine carboxylase); carboxy-lyase; 2.50A {Lactobacillus SP} SCOP: d.155.1.1 PDB: 1hq6_A 1ibv_A* 1ibu_A 1ibt_A* 1ibw_A* Probab=9.96 E-value=78 Score=13.97 Aligned_cols=12 Identities=50% Similarity=0.653 Sum_probs=8.9 Q ss_pred HHHHHHHHHHHE Q ss_conf 999986210030 Q 537021.9.peg.8 31 ILQKEIVSYDRT 42 (47) Q Consensus 31 ilqkeivsydrt 42 (47) -+-..||||||. T Consensus 54 ~~ld~IvsyDRa 65 (81) T 1pya_A 54 DVLDGIVSYDRA 65 (81) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHCEEEECHH T ss_conf 122050320213 No 4 >1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo sapiens} SCOP: a.29.7.1 PDB: 1r3b_A Probab=9.61 E-value=1e+02 Score=13.33 Aligned_cols=12 Identities=50% Similarity=0.725 Sum_probs=8.9 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999972 Q 537021.9.peg.8 14 SLMLYRVYHHIH 25 (47) Q Consensus 14 slmlyrvyhhih 25 (47) --.|+|||-||- T Consensus 121 ~rrLfRVyAHiY 132 (185) T 1pi1_A 121 LKRLFRVYAHIY 132 (185) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999999 No 5 >3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembrane, membrane protein, signaling protein; 1.99A {Mus musculus} Probab=8.43 E-value=1.2e+02 Score=12.97 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=22.2 Q ss_pred CHHCCHHHCCHHHHHHHHHHHHHHC Q ss_conf 1000744380699999999999720 Q 537021.9.peg.8 2 DKLLNAEEIPYFSLMLYRVYHHIHR 26 (47) Q Consensus 2 dkllnaeeipyfslmlyrvyhhihr 26 (47) .|||-|.|||-+--|.-+-|..|.. T Consensus 529 nKLLYAkdIP~Yk~~V~~YY~~I~~ 553 (627) T 3ig3_A 529 NKLLYAKDIPNYKSWVERYYRDIAK 553 (627) T ss_dssp HHHHTTTTHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 0036243248999999999999983 No 6 >3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, coiled coil; 2.40A {Homo sapiens} Probab=7.99 E-value=1.3e+02 Score=12.87 Aligned_cols=25 Identities=40% Similarity=0.677 Sum_probs=22.3 Q ss_pred CHHCCHHHCCHHHHHHHHHHHHHHC Q ss_conf 1000744380699999999999720 Q 537021.9.peg.8 2 DKLLNAEEIPYFSLMLYRVYHHIHR 26 (47) Q Consensus 2 dkllnaeeipyfslmlyrvyhhihr 26 (47) .|||-|.|||-+--|.-|-|..|.. T Consensus 543 nKLLYAkdIp~Yk~~V~~YY~~I~~ 567 (644) T 3hm6_X 543 NKLLYARDIPRYKRMVERYYADIRQ 567 (644) T ss_dssp HHHHTTTTHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 0036343248999999999999983 No 7 >2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S- adenosylmethionine; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A* Probab=7.84 E-value=9.9 Score=18.55 Aligned_cols=11 Identities=55% Similarity=1.171 Sum_probs=5.6 Q ss_pred HHHCCHHHHHH Q ss_conf 44380699999 Q 537021.9.peg.8 7 AEEIPYFSLML 17 (47) Q Consensus 7 aeeipyfslml 17 (47) .+++||||+|+ T Consensus 221 ~~~~~y~Slvi 231 (259) T 2e0n_A 221 SRAIPYFSLLV 231 (259) T ss_dssp SCCCCSSEEEE T ss_pred CCCCCCCEEEE T ss_conf 78799767999 No 8 >2pwo_A GAG-POL polyprotein (PR160GAG-POL); viral capsid, HIV-1, anti-viral, viral protein; 1.45A {Human immunodeficiency virus 1} PDB: 2pwm_A 2gon_A 1afv_A 1gwp_A 2pxr_C 2gol_B 1m9c_C 2x83_A 2x2d_D* 1ak4_C 2jpr_A* 1m9e_C 1m9y_C 1m9f_C 1m9x_C 1m9d_C 1fgl_B Probab=7.10 E-value=84 Score=13.79 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=24.8 Q ss_pred CHHCCHHHCCHHHHH-----HHHHHHHHHCCHH---------HHHHHHHHHHHHEEEE Q ss_conf 100074438069999-----9999999720117---------8999986210030343 Q 537021.9.peg.8 2 DKLLNAEEIPYFSLM-----LYRVYHHIHRDNA---------HILQKEIVSYDRTLMV 45 (47) Q Consensus 2 dkllnaeeipyfslm-----lyrvyhhihrdna---------hilqkeivsydrtlmv 45 (47) +|.+++|-||.||-. -|+.-+.+.--.. .++.+|.-.|||+--+ T Consensus 29 Ek~f~pEvIpmFsALSegatP~DlN~mLn~vgghqaamQ~lkd~InEeaaewDr~HP~ 86 (146) T 2pwo_A 29 EKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPV 86 (146) T ss_dssp HHTTSTTHHHHHHHHTTTCCHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHSCC T ss_pred HCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 6057821206899971898759899999864672889999999987999987046998 No 9 >2oqm_A Hypothetical protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.83A {Shewanella denitrificans} SCOP: a.213.1.3 Probab=6.32 E-value=1.6e+02 Score=12.42 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=21.8 Q ss_pred HHCCHHHHHHHH----HHHHHHCCHHHHHHHHH Q ss_conf 438069999999----99997201178999986 Q 537021.9.peg.8 8 EEIPYFSLMLYR----VYHHIHRDNAHILQKEI 36 (47) Q Consensus 8 eeipyfslmlyr----vyhhihrdnahilqkei 36 (47) .|--||.+|||. +|-++-+.-.++|+|-- T Consensus 12 ~~~~~~~~~LYd~sVp~f~q~L~~l~~iL~Kae 44 (192) T 2oqm_A 12 HENLYFQGMLYDLTVVQFSKMLKNLNAIFDKAE 44 (192) T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999987499779999999999999999999 No 10 >3odh_A Okrai endonuclease; alpha and beta proteins (A/B), restriction endonuclease-like phosphodiesterase; HET: DNA; 2.30A {Oceanobacter kriegii} Probab=5.21 E-value=1.6e+02 Score=12.32 Aligned_cols=12 Identities=50% Similarity=0.739 Sum_probs=6.3 Q ss_pred HCCHHH-CCHHHH Q ss_conf 007443-806999 Q 537021.9.peg.8 4 LLNAEE-IPYFSL 15 (47) Q Consensus 4 llnaee-ipyfsl 15 (47) .-|-+| -|||++ T Consensus 144 iGnf~ELepYF~~ 156 (194) T 3odh_A 144 VGNFRELEPYFSV 156 (194) T ss_dssp BCCHHHHGGGHHH T ss_pred CCCHHHCCCCHHH T ss_conf 4776650632467 Done!