RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= 537021.9.peg.874_1 (47 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 26.4 bits (58), Expect = 1.4 Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 4/24 (16%) Query: 6 NAEEIPYFS-L-MLYRVYHHIHRD 27 N ++ YF L LY+ YH + D Sbjct: 165 NTDD--YFEELRDLYQTYHVLVGD 186 >3o12_A Uncharacterized protein YJL217W; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.50A {Saccharomyces cerevisiae} Length = 221 Score = 25.8 bits (56), Expect = 2.6 Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 1/28 (3%) Query: 19 RVYHHIHRDNAHILQKEIVSYDRTLMVQ 46 ++ RD+ H L E T V+ Sbjct: 62 ETFYGFTRDSGHFLGVE-TGSAFTAQVR 88 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.329 0.142 0.428 Gapped Lambda K H 0.267 0.0545 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 410,215 Number of extensions: 11349 Number of successful extensions: 34 Number of sequences better than 10.0: 1 Number of HSP's gapped: 34 Number of HSP's successfully gapped: 3 Length of query: 47 Length of database: 5,693,230 Length adjustment: 20 Effective length of query: 27 Effective length of database: 5,208,350 Effective search space: 140625450 Effective search space used: 140625450 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 50 (23.5 bits)