RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.874_1
         (47 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.4 bits (58), Expect = 1.4
 Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 4/24 (16%)

Query: 6   NAEEIPYFS-L-MLYRVYHHIHRD 27
           N ++  YF  L  LY+ YH +  D
Sbjct: 165 NTDD--YFEELRDLYQTYHVLVGD 186


>3o12_A Uncharacterized protein YJL217W; structural genomics, PSI-2,
          protein structure initiative, MI center for structural
          genomics, MCSG; 1.50A {Saccharomyces cerevisiae}
          Length = 221

 Score = 25.8 bits (56), Expect = 2.6
 Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 1/28 (3%)

Query: 19 RVYHHIHRDNAHILQKEIVSYDRTLMVQ 46
            ++   RD+ H L  E      T  V+
Sbjct: 62 ETFYGFTRDSGHFLGVE-TGSAFTAQVR 88


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.329    0.142    0.428 

Gapped
Lambda     K      H
   0.267   0.0545    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 410,215
Number of extensions: 11349
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 3
Length of query: 47
Length of database: 5,693,230
Length adjustment: 20
Effective length of query: 27
Effective length of database: 5,208,350
Effective search space: 140625450
Effective search space used: 140625450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.5 bits)