Query 537021.9.peg.880_1
Match_columns 43
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed May 25 05:08:41 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_880.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pu9a1 g.36.1.1 (A:8-115) Fer 39.9 2.4 0.00017 21.4 -0.4 11 22-32 75-85 (108)
2 d1rlfa_ d.15.1.5 (A:) RalGDS-l 31.5 8.6 0.00063 18.4 1.3 15 7-21 20-34 (90)
3 d1lfda_ d.15.1.5 (A:) Ral guan 22.4 10 0.00076 18.0 0.4 16 6-21 16-31 (87)
4 d1ef5a_ d.15.1.5 (A:) Rgl {Mou 14.0 11 0.00077 17.9 -1.2 16 6-21 16-31 (88)
5 d1gh9a_ g.41.6.1 (A:) Hypothet 11.9 35 0.0025 15.1 1.0 22 12-34 12-33 (71)
6 d1eu1a2 c.81.1.1 (A:4-625) Dim 8.3 77 0.0056 13.3 1.7 15 25-39 9-23 (622)
7 d1v54f_ g.41.5.3 (F:) Cytochro 8.0 51 0.0037 14.3 0.6 15 23-37 80-95 (98)
8 d1jb7a3 b.40.4.3 (A:329-495) T 6.7 88 0.0064 13.0 1.3 11 6-17 99-109 (167)
9 d1q8da_ a.228.1.1 (A:) GDNF re 5.9 79 0.0057 13.2 0.7 13 16-28 57-78 (108)
10 d1dj0a_ d.265.1.1 (A:) Pseudou 5.7 91 0.0067 12.9 0.9 11 29-39 184-194 (264)
No 1
>d2pu9a1 g.36.1.1 (A:8-115) Ferredoxin thioredoxin reductase (FTR), catalytic beta chain {Synechocystis sp. [TaxId: 1143]}
Probab=39.94 E-value=2.4 Score=21.40 Aligned_cols=11 Identities=45% Similarity=1.177 Sum_probs=9.0
Q ss_pred CCEEEEEEEEE
Q ss_conf 45044014448
Q 537021.9.peg.8 22 KKWCHCGIFFQ 32 (43)
Q Consensus 22 kkwchcgiffq 32 (43)
.+-||||+|+.
T Consensus 75 ~g~ChC~Lf~t 85 (108)
T d2pu9a1 75 RKECHCMLFLT 85 (108)
T ss_dssp HCCCTTSSSBC
T ss_pred CCEEEEEEEEC
T ss_conf 28055877755
No 2
>d1rlfa_ d.15.1.5 (A:) RalGDS-like factor, Rlf {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.50 E-value=8.6 Score=18.42 Aligned_cols=15 Identities=40% Similarity=0.773 Sum_probs=13.6
Q ss_pred CEEEEEEEECCCCCC
Q ss_conf 024787873146897
Q 537021.9.peg.8 7 TYRAILLYSQEMTPN 21 (43)
Q Consensus 7 tyraillysqemtpn 21 (43)
-|+.|++-||+-||.
T Consensus 20 ~YKSIlltsqDktP~ 34 (90)
T d1rlfa_ 20 VYKSILVTSQDKAPS 34 (90)
T ss_dssp SCCEEEEETTCCCTT
T ss_pred EEEEEEEECCCCCHH
T ss_conf 788899852886779
No 3
>d1lfda_ d.15.1.5 (A:) Ral guanosine-nucleotide exchange factor, RalGDS {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=22.37 E-value=10 Score=17.97 Aligned_cols=16 Identities=38% Similarity=0.723 Sum_probs=13.8
Q ss_pred CCEEEEEEEECCCCCC
Q ss_conf 0024787873146897
Q 537021.9.peg.8 6 ETYRAILLYSQEMTPN 21 (43)
Q Consensus 6 etyraillysqemtpn 21 (43)
.-|+.|++-||+-||.
T Consensus 16 ~~YKSIllt~qDktP~ 31 (87)
T d1lfda_ 16 NMYKSILVTSQDKAPT 31 (87)
T ss_dssp EEEEEEEEETTCBHHH
T ss_pred CEEEEEEEECCCCCHH
T ss_conf 5899999852886779
No 4
>d1ef5a_ d.15.1.5 (A:) Rgl {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.04 E-value=11 Score=17.95 Aligned_cols=16 Identities=44% Similarity=0.767 Sum_probs=13.5
Q ss_pred CCEEEEEEEECCCCCC
Q ss_conf 0024787873146897
Q 537021.9.peg.8 6 ETYRAILLYSQEMTPN 21 (43)
Q Consensus 6 etyraillysqemtpn 21 (43)
.-|+.|++-||+-||.
T Consensus 16 ~~YKSIlltsqDktP~ 31 (88)
T d1ef5a_ 16 NMYKSIMLTSQDKTPA 31 (88)
T ss_dssp CCCCCBCCSSCCCTHH
T ss_pred CEEEEEEEECCCCCHH
T ss_conf 5899899852886779
No 5
>d1gh9a_ g.41.6.1 (A:) Hypothetical protein MTH1184 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=11.94 E-value=35 Score=15.15 Aligned_cols=22 Identities=41% Similarity=0.702 Sum_probs=16.4
Q ss_pred EEEECCCCCCCCEEEEEEEEEEE
Q ss_conf 78731468974504401444883
Q 537021.9.peg.8 12 LLYSQEMTPNKKWCHCGIFFQVV 34 (43)
Q Consensus 12 llysqemtpnkkwchcgiffqvv 34 (43)
.|||.|-+..+| |-||--..|-
T Consensus 12 vLYskEg~kTrK-CvCGkT~nVK 33 (71)
T d1gh9a_ 12 ALYSREGAKTRK-CVCGRTVNVK 33 (71)
T ss_dssp CEEEETTCSEEE-ETTTEEEECC
T ss_pred EEEECCCCCEEE-EECCCEEEHH
T ss_conf 454124641013-4416520044
No 6
>d1eu1a2 c.81.1.1 (A:4-625) Dimethylsulfoxide reductase (DMSO reductase) {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.29 E-value=77 Score=13.30 Aligned_cols=15 Identities=47% Similarity=0.806 Sum_probs=9.3
Q ss_pred EEEEEEEEEECCEEE
Q ss_conf 440144488336378
Q 537021.9.peg.8 25 CHCGIFFQVVGNGFL 39 (43)
Q Consensus 25 chcgiffqvvgngfl 39 (43)
||||.+.-.|-||-+
T Consensus 9 c~~~~~~v~v~dG~v 23 (622)
T d1eu1a2 9 CHWGVFKARVENGRA 23 (622)
T ss_dssp ETTEEEEEEEETTEE
T ss_pred CCCEEEEEEEECCEE
T ss_conf 784258999999999
No 7
>d1v54f_ g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.98 E-value=51 Score=14.26 Aligned_cols=15 Identities=27% Similarity=0.866 Sum_probs=11.0
Q ss_pred CEE-EEEEEEEEECCE
Q ss_conf 504-401444883363
Q 537021.9.peg.8 23 KWC-HCGIFFQVVGNG 37 (43)
Q Consensus 23 kwc-hcgiffqvvgng 37 (43)
+-| .||-+|+.|-.+
T Consensus 80 ~RC~eCG~~fkL~~~~ 95 (98)
T d1v54f_ 80 QRCPSCGTHYKLVPHQ 95 (98)
T ss_dssp EECTTTCCEEEEECCC
T ss_pred CCCCCCCCEEEEEECC
T ss_conf 6167788689983146
No 8
>d1jb7a3 b.40.4.3 (A:329-495) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]}
Probab=6.74 E-value=88 Score=12.98 Aligned_cols=11 Identities=64% Similarity=1.262 Sum_probs=6.6
Q ss_pred CCEEEEEEEECC
Q ss_conf 002478787314
Q 537021.9.peg.8 6 ETYRAILLYSQE 17 (43)
Q Consensus 6 etyraillysqe 17 (43)
.||| |+||+++
T Consensus 99 ntYr-IlLyth~ 109 (167)
T d1jb7a3 99 NTYR-VLLYTQD 109 (167)
T ss_dssp EEEE-EEEECTT
T ss_pred CEEE-EEEECCC
T ss_conf 6379-9996178
No 9
>d1q8da_ a.228.1.1 (A:) GDNF receptor alpha {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.92 E-value=79 Score=13.24 Aligned_cols=13 Identities=54% Similarity=1.365 Sum_probs=10.4
Q ss_pred CCCCCC---------CCEEEEE
Q ss_conf 146897---------4504401
Q 537021.9.peg.8 16 QEMTPN---------KKWCHCG 28 (43)
Q Consensus 16 qemtpn---------kkwchcg 28 (43)
-.|||| .-||-|.
T Consensus 57 T~~tpnYv~~~~~~v~~~CtC~ 78 (108)
T d1q8da_ 57 TVMTPNYVDSSSLSVAPWCDCS 78 (108)
T ss_dssp STTCCC--------CCCSCBCT
T ss_pred CCCCHHHHCCCCCCCCCCCCCC
T ss_conf 6356423135567558964278
No 10
>d1dj0a_ d.265.1.1 (A:) Pseudouridine synthase I TruA {Escherichia coli [TaxId: 562]}
Probab=5.67 E-value=91 Score=12.90 Aligned_cols=11 Identities=18% Similarity=0.582 Sum_probs=0.0
Q ss_pred EEEEEECCEEE
Q ss_conf 44488336378
Q 537021.9.peg.8 29 IFFQVVGNGFL 39 (43)
Q Consensus 29 iffqvvgngfl 39 (43)
+.|.+.||+||
T Consensus 184 i~i~i~g~sFL 194 (264)
T d1dj0a_ 184 VVVDIKANAFV 194 (264)
T ss_dssp EEEEEEESCCC
T ss_pred EEEEECHHHHH
T ss_conf 99874103799
Done!