RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.880_1
         (43 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.4 bits (62), Expect = 0.41
 Identities = 6/18 (33%), Positives = 11/18 (61%), Gaps = 1/18 (5%)

Query: 4  SLETYRAIL-LYSQEMTP 20
          +L+  +A L LY+ +  P
Sbjct: 21 ALKKLQASLKLYADDSAP 38


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.331    0.146    0.486 

Gapped
Lambda     K      H
   0.267   0.0427    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 375,496
Number of extensions: 8560
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 2
Length of query: 43
Length of database: 5,693,230
Length adjustment: 16
Effective length of query: 27
Effective length of database: 5,305,326
Effective search space: 143243802
Effective search space used: 143243802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.8 bits)