RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.880_1
         (43 letters)



>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
           (MetRS) {Pyrococcus abyssi [TaxId: 29292]}
          Length = 361

 Score = 25.7 bits (55), Expect = 0.92
 Identities = 7/41 (17%), Positives = 15/41 (36%)

Query: 3   FSLETYRAILLYSQEMTPNKKWCHCGIFFQVVGNGFLLLNG 43
           F    + A L+   +    +      + + +  N +L L G
Sbjct: 267 FHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEG 307


>d2pu9a1 g.36.1.1 (A:8-115) Ferredoxin thioredoxin reductase
          (FTR), catalytic beta chain {Synechocystis sp. [TaxId:
          1143]}
          Length = 108

 Score = 22.5 bits (48), Expect = 9.5
 Identities = 5/12 (41%), Positives = 7/12 (58%)

Query: 20 PNKKWCHCGIFF 31
            +K CHC +F 
Sbjct: 73 RERKECHCMLFL 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.146    0.486 

Gapped
Lambda     K      H
   0.267   0.0628    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 164,555
Number of extensions: 3936
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 2
Length of query: 43
Length of database: 2,407,596
Length adjustment: 16
Effective length of query: 27
Effective length of database: 2,187,916
Effective search space: 59073732
Effective search space used: 59073732
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.1 bits)