Query 537021.9.peg.885_1 Match_columns 54 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 39220 Date Wed May 25 01:45:33 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_885.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PHA01623 hypothetical protein 34.9 23 0.0006 18.2 1.7 18 19-36 34-51 (56) 2 TIGR02103 pullul_strch alpha-1 34.3 12 0.00031 19.7 0.2 36 4-44 570-606 (945) 3 KOG0054 consensus 24.9 39 0.001 17.1 1.4 19 20-38 1310-1328(1381) 4 PTZ00243 ABC transporter; Prov 21.6 49 0.0012 16.6 1.4 19 20-38 1481-1499(1560) 5 pfam07939 DUF1685 Protein of u 19.7 36 0.00091 17.3 0.4 14 29-42 6-19 (64) 6 TIGR02041 CysI sulfite reducta 16.2 1.1E+02 0.0028 14.7 2.2 26 5-30 381-407 (550) 7 TIGR01950 SoxR redox-sensitive 12.6 1.4E+02 0.0035 14.2 1.8 26 19-46 91-118 (142) 8 pfam05326 SVA Seminal vesicle 11.0 52 0.0013 16.4 -0.7 22 29-50 57-78 (124) 9 KOG3909 consensus 10.4 99 0.0025 14.9 0.5 28 7-37 296-323 (414) 10 PRK12933 secD preprotein trans 8.2 1.9E+02 0.0049 13.4 1.3 20 23-42 512-531 (604) No 1 >PHA01623 hypothetical protein Probab=34.91 E-value=23 Score=18.23 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=14.5 Q ss_pred ECHHHHHHHHHHHHHHHH Q ss_conf 375899999999721021 Q 537021.9.peg.8 19 FNDKKIQELIREELRGCM 36 (54) Q Consensus 19 fndkkiqelireelrgcm 36 (54) -||++||..|||.+.... T Consensus 34 ~n~~~~~~~i~ea~~eyl 51 (56) T PHA01623 34 KNNLQLTQAIEEAIKEYL 51 (56) T ss_pred CCCHHHHHHHHHHHHHHH T ss_conf 364879999999999999 No 2 >TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type; InterPro: IPR011839 Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from the pullulanases of Gram-positive bacteria (IPR011838 from INTERPRO).; GO: 0051060 pullulanase activity, 0005975 carbohydrate metabolic process. Probab=34.30 E-value=12 Score=19.71 Aligned_cols=36 Identities=39% Similarity=0.573 Sum_probs=27.2 Q ss_pred CCCCCCEEEEEEEE-EECHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 20002025799857-637589999999972102120020002 Q 537021.9.peg.8 4 GKLTSNINLTLTGI-TFNDKKIQELIREELRGCMTIKSGILS 44 (54) Q Consensus 4 gkltsninltltgi-tfndkkiqelireelrgcmtiksgils 44 (54) |+-.+-+||.=||| ||||. +|.-+||--..-+|+-| T Consensus 570 f~~AtQlNL~GTGIGtFsDR-----lRDA~RGGsPFd~Gvds 606 (945) T TIGR02103 570 FINATQLNLAGTGIGTFSDR-----LRDAVRGGSPFDSGVDS 606 (945) T ss_pred CCHHHHHHHCCCCCCCCCHH-----HHHHHHCCCCCCCCCCC T ss_conf 21035554136764411146-----88764078888877367 No 3 >KOG0054 consensus Probab=24.88 E-value=39 Score=17.07 Aligned_cols=19 Identities=42% Similarity=0.767 Sum_probs=16.4 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 7589999999972102120 Q 537021.9.peg.8 20 NDKKIQELIREELRGCMTI 38 (54) Q Consensus 20 ndkkiqelireelrgcmti 38 (54) .|..||+-||++...|-.+ T Consensus 1310 TD~lIQ~tIR~~F~dcTVL 1328 (1381) T KOG0054 1310 TDALIQKTIREEFKDCTVL 1328 (1381) T ss_pred HHHHHHHHHHHHHCCCEEE T ss_conf 8999999999983789699 No 4 >PTZ00243 ABC transporter; Provisional Probab=21.64 E-value=49 Score=16.56 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=15.8 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 7589999999972102120 Q 537021.9.peg.8 20 NDKKIQELIREELRGCMTI 38 (54) Q Consensus 20 ndkkiqelireelrgcmti 38 (54) .|+.||+.||++.++|-.| T Consensus 1481 TD~lIQ~tIr~~F~~~TVI 1499 (1560) T PTZ00243 1481 LDRQIQATVMSAFSAYTVI 1499 (1560) T ss_pred HHHHHHHHHHHHHCCCEEE T ss_conf 9999999999982899899 No 5 >pfam07939 DUF1685 Protein of unknown function (DUF1685). The members of this family are hypothetical eukaryotic proteins of unknown function. The region in question is approximately 100 amino acid residues long. Probab=19.73 E-value=36 Score=17.27 Aligned_cols=14 Identities=43% Similarity=0.900 Sum_probs=10.8 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99721021200200 Q 537021.9.peg.8 29 REELRGCMTIKSGI 42 (54) Q Consensus 29 reelrgcmtiksgi 42 (54) -+|||||+..--|. T Consensus 6 l~ELkGc~dLGFGF 19 (64) T pfam07939 6 LEELKGCFELGFGF 19 (64) T ss_pred HHHHHCCCCCCCCC T ss_conf 89972431015675 No 6 >TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component; InterPro: IPR011786 Sulphite reductase (NADPH) catalyzes a six electron reduction of sulphite to sulphide in prokaryotic organisms. It is a complex oligomeric enzyme composed of two different peptides with a subunit composition of alpha(8)-beta(4). The alpha component, encoded by cysJ, is a flavoprotein containing both FMN and FAD, while the beta component, encoded by cysI, is a siroheme, iron-sulphur protein.; GO: 0004783 sulfite reductase (NADPH) activity, 0050661 NADP binding, 0051539 4 iron 4 sulfur cluster binding, 0008652 amino acid biosynthetic process, 0009337 sulfite reductase complex (NADPH). Probab=16.18 E-value=1.1e+02 Score=14.71 Aligned_cols=26 Identities=38% Similarity=0.572 Sum_probs=21.5 Q ss_pred CCCCCEEEEEEEEEECHH-HHHHHHHH Q ss_conf 000202579985763758-99999999 Q 537021.9.peg.8 5 KLTSNINLTLTGITFNDK-KIQELIRE 30 (54) Q Consensus 5 kltsninltltgitfndk-kiqelire 30 (54) .+|||-||-..+++-..| ||.+|+++ T Consensus 381 RiT~NQNlIiA~V~e~~K~~Ie~l~~~ 407 (550) T TIGR02041 381 RITSNQNLIIANVPEGGKAKIEALARQ 407 (550) T ss_pred EECCCCCEEEECCCCHHHHHHHHHHHH T ss_conf 344776378842784236889999998 No 7 >TIGR01950 SoxR redox-sensitive transcriptional activator SoxR; InterPro: IPR010211 SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulphur cluster activates SoxR. The physiological role in Escherichia coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In Escherichia coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0005506 iron ion binding, 0006118 electron transport, 0006355 regulation of transcription DNA-dependent, 0006979 response to oxidative stress. Probab=12.60 E-value=1.4e+02 Score=14.24 Aligned_cols=26 Identities=42% Similarity=0.755 Sum_probs=16.2 Q ss_pred ECHHHHHHH--HHHHHHHHHHHHHHHCCCC Q ss_conf 375899999--9997210212002000264 Q 537021.9.peg.8 19 FNDKKIQEL--IREELRGCMTIKSGILSNR 46 (54) Q Consensus 19 fndkkiqel--ireelrgcmtiksgilsnr 46 (54) +=|..|+.| .|++|-|| |--|-||-. T Consensus 91 ~LdeRI~~L~~LRD~LdgC--IGCGCLSLe 118 (142) T TIGR01950 91 ELDERIEQLNALRDQLDGC--IGCGCLSLE 118 (142) T ss_pred HHHHHHHHHHHHHHHCCCC--CCCCCCCCC T ss_conf 8899999997677641686--236755402 No 8 >pfam05326 SVA Seminal vesicle autoantigen (SVA). This family consists of seminal vesicle autoantigen and prolactin-inducible (PIP) proteins. Seminal vesicle autoantigen (SVA) is specifically present in the seminal plasma of mice. This 19-kDa secretory glycoprotein suppresses the motility of spermatozoa by interacting with phospholipid. PIP, has several known functions. In saliva, this protein plays a role in host defence by binding to microorganisms such as Streptococcus. PIP is an aspartyl proteinase and it acts as a factor capable of suppressing T-cell apoptosis through its interaction with CD4. Probab=10.95 E-value=52 Score=16.40 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=18.4 Q ss_pred HHHHHHHHHHHHHHCCCCCCCC Q ss_conf 9972102120020002642113 Q 537021.9.peg.8 29 REELRGCMTIKSGILSNRSAKI 50 (54) Q Consensus 29 reelrgcmtiksgilsnrsaki 50 (54) ..+++-||.+|--+.||+.-|. T Consensus 57 ~~~v~eCmVVK~~l~sn~~i~~ 78 (124) T pfam05326 57 KTNVKECMVVKAYLESNPPIKG 78 (124) T ss_pred ECCCCEEEEEEEEEECCCCEEE T ss_conf 7032246999999713884442 No 9 >KOG3909 consensus Probab=10.37 E-value=99 Score=14.95 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=20.8 Q ss_pred CCCEEEEEEEEEECHHHHHHHHHHHHHHHHH Q ss_conf 0202579985763758999999997210212 Q 537021.9.peg.8 7 TSNINLTLTGITFNDKKIQELIREELRGCMT 37 (54) Q Consensus 7 tsninltltgitfndkkiqelireelrgcmt 37 (54) .|.|.+ |+.|+|+|++|-...-++||.- T Consensus 296 ~skie~---~ld~~dekfaeDftpl~sgC~C 323 (414) T KOG3909 296 NSKIEL---GLDMWDEKFAEDFTPLQSGCVC 323 (414) T ss_pred HHCEEE---EECCCHHHHHHHCCCCCCCCCE T ss_conf 431233---3214256655315411158514 No 10 >PRK12933 secD preprotein translocase subunit SecD; Reviewed Probab=8.20 E-value=1.9e+02 Score=13.43 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=10.7 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999721021200200 Q 537021.9.peg.8 23 KIQELIREELRGCMTIKSGI 42 (54) Q Consensus 23 kiqelireelrgcmtiksgi 42 (54) -|-|-||||+|--.++++.| T Consensus 512 lifERirEElr~G~~~~~Ai 531 (604) T PRK12933 512 LIFERIKDKLKEGRSFALAI 531 (604) T ss_pred HHHHHHHHHHHCCCCHHHHH T ss_conf 37488899997699879999 Done!