Query         537021.9.peg.885_1
Match_columns 54
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed May 25 03:05:51 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_885.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2kel_A SVTR protein, uncharac  28.8      17 0.00051   18.6   0.5   18   19-36     34-51  (56)
  2 >3h33_A Cytochrome C7, cytochr  26.1      21 0.00061   18.2   0.5   20   16-36     12-31  (37)
  3 >3bxu_A Cytochrome C3; multihe  24.3      20 0.00059   18.2   0.2   20   16-36     12-31  (37)
  4 >2dlq_A GLI-kruppel family mem   9.2 1.3E+02  0.0037   14.1   1.0   13   25-37     18-30  (30)
  5 >1zq1_A Glutamyl-tRNA(Gln) ami   7.0 1.4E+02  0.0041   13.9   0.4   25   18-42    106-130 (135)
  6 >3euh_C MUKE, chromosome parti   7.0      47  0.0014   16.3  -1.9   35    2-36     45-79  (105)
  7 >2o0a_A S.cerevisiae chromosom   6.7 2.2E+02  0.0066   12.8   1.5   17   21-37      3-27  (298)
  8 >1naq_A Periplasmic divalent c   6.3 2.4E+02   0.007   12.6   1.7   34   11-44     10-48  (112)
  9 >3knu_A TRNA (guanine-N(1)-)-m   6.1 2.4E+02  0.0071   12.6   2.1   24    8-31    103-126 (188)
 10 >1xew_Y SMC protein; structura   5.8 2.5E+02  0.0073   12.5   1.2   19   20-38     17-35  (48)

No 1  
>>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repressor; NMR {Sulfolobus islandicus rod-shaped VIRUS1} (A:)
Probab=28.76  E-value=17  Score=18.57  Aligned_cols=18  Identities=17%  Similarity=0.379  Sum_probs=14.2

Q ss_pred             ECHHHHHHHHHHHHHHHH
Q ss_conf             375899999999721021
Q 537021.9.peg.8   19 FNDKKIQELIREELRGCM   36 (54)
Q Consensus        19 fndkkiqelireelrgcm   36 (54)
                      -||++||..|||.+....
T Consensus        34 ~N~~~i~~~I~EAi~EYL   51 (56)
T 2kel_A           34 KNNLQLTQAIEEAIKEYL   51 (56)
T ss_dssp             HSCCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
T ss_conf             364879999999999999


No 2  
>>3h33_A Cytochrome C7, cytochrome C3; multiheme cytochrome, electron transport; HET: HEM; 2.25A {Geobacter sulfurreducens} (A:1-37)
Probab=26.08  E-value=21  Score=18.18  Aligned_cols=20  Identities=40%  Similarity=0.732  Sum_probs=14.8

Q ss_pred             EEEECHHHHHHHHHHHHHHHH
Q ss_conf             576375899999999721021
Q 537021.9.peg.8   16 GITFNDKKIQELIREELRGCM   36 (54)
Q Consensus        16 gitfndkkiqelireelrgcm   36 (54)
                      .+||+.||-||+..+ -++|-
T Consensus        12 ~VtF~HKkHq~~l~~-Ck~CH   31 (37)
T 3h33_A           12 AVVFPHKKHQDALGE-CRGCH   31 (37)
T ss_dssp             BEEEEHHHHHHHHCC-STTTC
T ss_pred             CEECCHHHHHHCCCC-CCCCC
T ss_conf             865588999870788-01047


No 3  
>>3bxu_A Cytochrome C3; multiheme cytochromes, electron transport; HET: HEM; 1.35A {Geobacter sulfurreducens} PDB: 1os6_A* (A:1-37)
Probab=24.30  E-value=20  Score=18.24  Aligned_cols=20  Identities=30%  Similarity=0.582  Sum_probs=14.5

Q ss_pred             EEEECHHHHHHHHHHHHHHHH
Q ss_conf             576375899999999721021
Q 537021.9.peg.8   16 GITFNDKKIQELIREELRGCM   36 (54)
Q Consensus        16 gitfndkkiqelireelrgcm   36 (54)
                      .+||+.||-||+..+ -++|-
T Consensus        12 ~VtF~HKkHq~~l~~-Ck~CH   31 (37)
T 3bxu_A           12 NVTFDHKKHQTIVPD-CAVCH   31 (37)
T ss_dssp             EEEECHHHHHHHSSC-THHHH
T ss_pred             CEECCHHHHHHHCCC-CCCCC
T ss_conf             865688999873788-00037


No 4  
>>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:32-61)
Probab=9.17  E-value=1.3e+02  Score=14.06  Aligned_cols=13  Identities=38%  Similarity=0.871  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999997210212
Q 537021.9.peg.8   25 QELIREELRGCMT   37 (54)
Q Consensus        25 qelireelrgcmt   37 (54)
                      ..|+..|.|.||+
T Consensus        18 enllehearncm~   30 (30)
T 2dlq_A           18 ENLLEHEARNCMN   30 (30)
T ss_dssp             HHHHHHHHHCCCC
T ss_pred             CCCCCCCCCCCCC
T ss_conf             1112111111110


No 5  
>>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} (A:304-438)
Probab=7.00  E-value=1.4e+02  Score=13.87  Aligned_cols=25  Identities=16%  Similarity=0.153  Sum_probs=19.5

Q ss_pred             EECHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6375899999999721021200200
Q 537021.9.peg.8   18 TFNDKKIQELIREELRGCMTIKSGI   42 (54)
Q Consensus        18 tfndkkiqelireelrgcmtiksgi   42 (54)
                      +.+-++||++....+||-|++.|..
T Consensus       106 ~~d~~~i~~~f~~~l~GE~~~~s~~  130 (135)
T 1zq1_A          106 TQNLEEVRKXXLTNYAGEITPYTRF  130 (135)
T ss_dssp             CCCHHHHHHHHHSCSSTTSCSSCBT
T ss_pred             CCCHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             9999999999633667525887675


No 6  
>>3euh_C MUKE, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} (C:85-189)
Probab=6.96  E-value=47  Score=16.29  Aligned_cols=35  Identities=31%  Similarity=0.374  Sum_probs=26.7

Q ss_pred             CCCCCCCCEEEEEEEEEECHHHHHHHHHHHHHHHH
Q ss_conf             73200020257998576375899999999721021
Q 537021.9.peg.8    2 DAGKLTSNINLTLTGITFNDKKIQELIREELRGCM   36 (54)
Q Consensus         2 dagkltsninltltgitfndkkiqelireelrgcm   36 (54)
                      |..||-.-+|.--+|-.+...|.||-+|..||---
T Consensus        45 de~kLlk~vn~Rs~gsdlDk~kl~EkvrtsLrRLr   79 (105)
T 3euh_C           45 DEAKLLKLVNNRSTGSDVDRQKLQEKVRSSLNRLR   79 (105)
T ss_dssp             CHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             68999988356677542309999999999999998


No 7  
>>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} (A:)
Probab=6.72  E-value=2.2e+02  Score=12.78  Aligned_cols=17  Identities=35%  Similarity=0.491  Sum_probs=9.8

Q ss_pred             HHHHHHHHH--------HHHHHHHH
Q ss_conf             589999999--------97210212
Q 537021.9.peg.8   21 DKKIQELIR--------EELRGCMT   37 (54)
Q Consensus        21 dkkiqelir--------eelrgcmt   37 (54)
                      ||--||+.|        +|+|||+.
T Consensus         3 DkmeqEq~rRRkLeNSIdElkG~iR   27 (298)
T 2o0a_A            3 STVEKELLRSRRLENSIIEQKGTMR   27 (298)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTCCE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCEEE
T ss_conf             3388999999888755998625166


No 8  
>>1naq_A Periplasmic divalent cation tolerance protein CUTA; copper resistance, structural proteomics in europe, spine, structural genomics; HET: MBO; 1.70A {Escherichia coli} (A:)
Probab=6.26  E-value=2.4e+02  Score=12.64  Aligned_cols=34  Identities=24%  Similarity=0.322  Sum_probs=23.7

Q ss_pred             EEEEEEEEECHHH-----HHHHHHHHHHHHHHHHHHHCC
Q ss_conf             5799857637589-----999999972102120020002
Q 537021.9.peg.8   11 NLTLTGITFNDKK-----IQELIREELRGCMTIKSGILS   44 (54)
Q Consensus        11 nltltgitfndkk-----iqelireelrgcmtiksgils   44 (54)
                      .+.+--+|+.|..     .+.|+++.|-.|..|-.+|-|
T Consensus        10 ~~~lv~tT~~~~e~A~~la~~lv~~rLaACvni~p~i~S   48 (112)
T 1naq_A           10 ASVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATS   48 (112)
T ss_dssp             CEEEEEEEESSHHHHHHHHHHHHHTTSCSEEEEEEEEEE
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCEEE
T ss_conf             789999917999999999999997290999924798338


No 9  
>>3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious disease; 2.25A {Anaplasma phagocytophilum HZ} (A:1-188)
Probab=6.11  E-value=2.4e+02  Score=12.59  Aligned_cols=24  Identities=8%  Similarity=0.209  Sum_probs=20.1

Q ss_pred             CCEEEEEEEEEECHHHHHHHHHHH
Q ss_conf             202579985763758999999997
Q 537021.9.peg.8    8 SNINLTLTGITFNDKKIQELIREE   31 (54)
Q Consensus         8 sninltltgitfndkkiqeliree   31 (54)
                      --|-++-.|.+|+.+..+||.+++
T Consensus       103 ~vi~lSP~Gk~f~Q~~a~eLa~~~  126 (188)
T 3knu_A          103 KLMFTSPRGVSFTQDIARQTMNFD  126 (188)
T ss_dssp             EEEEEEEEEEECCHHHHHHHHTCS
T ss_pred             EEEEECCCCCCCCEEEEEECCCCC
T ss_conf             599835898520130000012577


No 10 
>>1xew_Y SMC protein; structural maintenance of chromosomes, ABC-atpases, condensin, cohesin, cell cycle; 2.00A {Pyrococcus furiosus} (Y:86-133)
Probab=5.76  E-value=2.5e+02  Score=12.53  Aligned_cols=19  Identities=32%  Similarity=0.485  Sum_probs=15.7

Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q ss_conf             7589999999972102120
Q 537021.9.peg.8   20 NDKKIQELIREELRGCMTI   38 (54)
Q Consensus        20 ndkkiqelireelrgcmti   38 (54)
                      +.+++++.+++-.+|+..|
T Consensus        17 ~~~~i~~~l~~~~~~~tvi   35 (48)
T 1xew_Y           17 NVKRVADLIKESSKESQFI   35 (48)
T ss_dssp             HHHHHHHHHHHHTTTSEEE
T ss_pred             HHHHHHHHHHHHCCCCEEE
T ss_conf             9999999999834677699


Done!