Query         537021.9.peg.885_1
Match_columns 54
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Wed May 25 01:30:41 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_885.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2kel_A SVTR protein, uncharact  28.8      12 0.00051   18.6   0.5   18   19-36     34-51  (56)
  2 1rgx_A Resistin, adipose; horm   9.4 1.2E+02  0.0049   13.5   1.7   28   20-49     32-59  (114)
  3 1th5_A NIFU1; iron-sulfur clus   9.1      57  0.0024   15.1   0.0   11   33-43     47-57  (74)
  4 1jp4_A 3'(2'),5'-bisphosphate    7.0 1.5E+02  0.0064   12.8   1.4   30   17-47     47-76  (308)
  5 1n6j_G Calcineurin-binding pro   4.1 1.8E+02  0.0076   12.4   0.4   13   37-49     16-28  (35)
  6 2p3n_A Inositol-1-monophosphat   4.0 2.4E+02    0.01   11.8   1.4   28   17-45     38-65  (256)
  7 1h3o_B Transcription initiatio   3.5 2.7E+02   0.011   11.5   1.7   13   19-31      6-18  (76)
  8 2beq_D E2 glycoprotein; viral    3.4 1.1E+02  0.0047   13.5  -1.2   24    7-30      5-28  (48)
  9 2w1o_A 60S acidic ribosomal pr   3.4 2.2E+02  0.0092   12.0   0.2   13   20-32     48-60  (70)
 10 1inp_A Inositol polyphosphate    3.3 2.8E+02   0.012   11.4   1.9   32   17-48     50-82  (400)

No 1  
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repressor; NMR {Sulfolobus islandicus rod-shaped VIRUS1}
Probab=28.76  E-value=12  Score=18.57  Aligned_cols=18  Identities=17%  Similarity=0.379  Sum_probs=14.2

Q ss_pred             ECHHHHHHHHHHHHHHHH
Q ss_conf             375899999999721021
Q 537021.9.peg.8   19 FNDKKIQELIREELRGCM   36 (54)
Q Consensus        19 fndkkiqelireelrgcm   36 (54)
                      -||++||..|||.+....
T Consensus        34 ~N~~~i~~~I~EAi~EYL   51 (56)
T 2kel_A           34 KNNLQLTQAIEEAIKEYL   51 (56)
T ss_dssp             HSCCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
T ss_conf             364879999999999999


No 2  
>1rgx_A Resistin, adipose; hormone, glucose uptake, resistin/FIZZ family, structural genomics, PSI, protein structure initiative; 1.79A {Mus musculus} SCOP: g.77.1.1 PDB: 1rfx_A*
Probab=9.43  E-value=1.2e+02  Score=13.46  Aligned_cols=28  Identities=25%  Similarity=0.033  Sum_probs=15.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             758999999997210212002000264211
Q 537021.9.peg.8   20 NDKKIQELIREELRGCMTIKSGILSNRSAK   49 (54)
Q Consensus        20 ndkkiqelireelrgcmtiksgilsnrsak   49 (54)
                      -||||+|....-  ..-+++..-||-+|.+
T Consensus        32 v~~KIke~~~sl--~~~~~~~~~LsC~SV~   59 (114)
T 1rgx_A           32 IDKKIKQDFNSL--FPNAIKNIGLNCWTVS   59 (114)
T ss_dssp             HHHHHHHHHHHH--HHHHHTTEEEEEEEEE
T ss_pred             HHHHHHHHHHHH--CCCCCCCCCEEEEEEE
T ss_conf             999999998740--6331000425889873


No 3  
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=9.07  E-value=57  Score=15.08  Aligned_cols=11  Identities=9%  Similarity=0.075  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHC
Q ss_conf             10212002000
Q 537021.9.peg.8   33 RGCMTIKSGIL   43 (54)
Q Consensus        33 rgcmtiksgil   43 (54)
                      .||+|.|.||-
T Consensus        47 ~gC~Tl~~~Ie   57 (74)
T 1th5_A           47 AVVRTVRIAVS   57 (74)
T ss_dssp             SSSSSHHHHHH
T ss_pred             CCCHHHHHHHH
T ss_conf             76266999999


No 4  
>1jp4_A 3'(2'),5'-bisphosphate nucleotidase; protein-product complex, sugar nucleotidase fold, hydrolase; HET: AMP; 1.69A {Rattus norvegicus} SCOP: e.7.1.1 PDB: 2wef_A*
Probab=6.97  E-value=1.5e+02  Score=12.85  Aligned_cols=30  Identities=23%  Similarity=0.197  Sum_probs=22.3

Q ss_pred             EEECHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             7637589999999972102120020002642
Q 537021.9.peg.8   17 ITFNDKKIQELIREELRGCMTIKSGILSNRS   47 (54)
Q Consensus        17 itfndkkiqelireelrgcmtiksgilsnrs   47 (54)
                      .|--|+.+|++|++.|+.... ..+|++..+
T Consensus        47 VT~aD~~~e~~i~~~L~~~fP-~~~iigEE~   76 (308)
T 1jp4_A           47 QTKADRMVQMSICSSLSRKFP-KLTIIGEED   76 (308)
T ss_dssp             ECHHHHHHHHHHHHHHHHHCT-TSEEEESSC
T ss_pred             CCHHHHHHHHHHHHHHHHHCC-CCEEEECCC
T ss_conf             569999999999999998888-986983255


No 5  
>1n6j_G Calcineurin-binding protein cabin 1; MADS-BOX, protein-DNA complex, histone deacetylases, transcription/DNA complex; 2.20A {Homo sapiens}
Probab=4.15  E-value=1.8e+02  Score=12.45  Aligned_cols=13  Identities=54%  Similarity=0.626  Sum_probs=10.2

Q ss_pred             HHHHHHCCCCCCC
Q ss_conf             2002000264211
Q 537021.9.peg.8   37 TIKSGILSNRSAK   49 (54)
Q Consensus        37 tiksgilsnrsak   49 (54)
                      ..|+.|||..||.
T Consensus        16 klk~~ils~qsaa   28 (35)
T 1n6j_G           16 KLKSAILSAQSAA   28 (35)
T ss_dssp             HHHHHHHTTCSTT
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999998516654


No 6  
>2p3n_A Inositol-1-monophosphatase; tetramer, hydrolase; 2.20A {Thermotoga maritima MSB8} PDB: 2p3v_A*
Probab=4.03  E-value=2.4e+02  Score=11.81  Aligned_cols=28  Identities=25%  Similarity=0.423  Sum_probs=18.7

Q ss_pred             EEECHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             76375899999999721021200200026
Q 537021.9.peg.8   17 ITFNDKKIQELIREELRGCMTIKSGILSN   45 (54)
Q Consensus        17 itfndkkiqelireelrgcmtiksgilsn   45 (54)
                      .|--|+.++++|++.|+-.. -..+|++.
T Consensus        38 VT~~D~~~e~~i~~~L~~~~-P~~~i~~E   65 (256)
T 2p3n_A           38 VTEIDREAQRMIVDEIRKFF-PDENIMAE   65 (256)
T ss_dssp             ECHHHHHHHHHHHHHHHHHS-TTCEEEES
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CCCEEEEC
T ss_conf             88999999999999999878-99809841


No 7  
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=3.50  E-value=2.7e+02  Score=11.55  Aligned_cols=13  Identities=46%  Similarity=0.797  Sum_probs=9.6

Q ss_pred             ECHHHHHHHHHHH
Q ss_conf             3758999999997
Q 537021.9.peg.8   19 FNDKKIQELIREE   31 (54)
Q Consensus        19 fndkkiqeliree   31 (54)
                      ++.+++|||+++-
T Consensus         6 ltK~~L~eLv~~i   18 (76)
T 1h3o_B            6 LTKKKLQDLVREV   18 (76)
T ss_dssp             SCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHC
T ss_conf             6699999999961


No 8  
>2beq_D E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1 PDB: 1zv7_A
Probab=3.40  E-value=1.1e+02  Score=13.54  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=17.8

Q ss_pred             CCCEEEEEEEEEECHHHHHHHHHH
Q ss_conf             020257998576375899999999
Q 537021.9.peg.8    7 TSNINLTLTGITFNDKKIQELIRE   30 (54)
Q Consensus         7 tsninltltgitfndkkiqelire   30 (54)
                      -|.||.|.-.|+..-..|||.|+.
T Consensus         5 ~~~~N~t~ldi~~Ei~~l~evik~   28 (48)
T 2beq_D            5 ISGINASVVNIQKEIDRLNEVAKN   28 (48)
T ss_dssp             CTTCCCCCCCCHHHHHHHHHHHTT
T ss_pred             HHHCCEEEEEHHHHHHHHHHHHHH
T ss_conf             302326555659899999999999


No 9  
>2w1o_A 60S acidic ribosomal protein P2; ribonucleoprotein, ribosome, translation, dimerization, phosphoprotein; NMR {Homo sapiens}
Probab=3.36  E-value=2.2e+02  Score=12.00  Aligned_cols=13  Identities=31%  Similarity=0.647  Sum_probs=6.8

Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             7589999999972
Q 537021.9.peg.8   20 NDKKIQELIREEL   32 (54)
Q Consensus        20 ndkkiqelireel   32 (54)
                      +.|.|+|||.+-.
T Consensus        48 ~GK~i~ElIa~G~   60 (70)
T 2w1o_A           48 NGKNIEDVIAQGI   60 (70)
T ss_dssp             HHSCHHHHHHHHS
T ss_pred             CCCCHHHHHHHHH
T ss_conf             6998999999548


No 10 
>1inp_A Inositol polyphosphate 1-phosphatase; hydrolase(phosphoric monoester); 2.30A {Bos taurus} SCOP: e.7.1.1
Probab=3.32  E-value=2.8e+02  Score=11.45  Aligned_cols=32  Identities=25%  Similarity=0.399  Sum_probs=19.9

Q ss_pred             EEECHHHHHHHHHHHHHHHHH-HHHHHCCCCCC
Q ss_conf             763758999999997210212-00200026421
Q 537021.9.peg.8   17 ITFNDKKIQELIREELRGCMT-IKSGILSNRSA   48 (54)
Q Consensus        17 itfndkkiqelireelrgcmt-iksgilsnrsa   48 (54)
                      .|--|..+|++|+++|+.-.. +.-.|++.-++
T Consensus        50 VT~AD~~~q~~I~~~L~~~fP~~~~~IvGEE~~   82 (400)
T 1inp_A           50 KTLADVLVQEVIKENMENKFPGLGKKIFGEESN   82 (400)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTGGGGEEESSCS
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCEECCCCC
T ss_conf             418999999999999998786999988815888


Done!