Query 537021.9.peg.885_1 Match_columns 54 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 01:30:41 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_885.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2kel_A SVTR protein, uncharact 28.8 12 0.00051 18.6 0.5 18 19-36 34-51 (56) 2 1rgx_A Resistin, adipose; horm 9.4 1.2E+02 0.0049 13.5 1.7 28 20-49 32-59 (114) 3 1th5_A NIFU1; iron-sulfur clus 9.1 57 0.0024 15.1 0.0 11 33-43 47-57 (74) 4 1jp4_A 3'(2'),5'-bisphosphate 7.0 1.5E+02 0.0064 12.8 1.4 30 17-47 47-76 (308) 5 1n6j_G Calcineurin-binding pro 4.1 1.8E+02 0.0076 12.4 0.4 13 37-49 16-28 (35) 6 2p3n_A Inositol-1-monophosphat 4.0 2.4E+02 0.01 11.8 1.4 28 17-45 38-65 (256) 7 1h3o_B Transcription initiatio 3.5 2.7E+02 0.011 11.5 1.7 13 19-31 6-18 (76) 8 2beq_D E2 glycoprotein; viral 3.4 1.1E+02 0.0047 13.5 -1.2 24 7-30 5-28 (48) 9 2w1o_A 60S acidic ribosomal pr 3.4 2.2E+02 0.0092 12.0 0.2 13 20-32 48-60 (70) 10 1inp_A Inositol polyphosphate 3.3 2.8E+02 0.012 11.4 1.9 32 17-48 50-82 (400) No 1 >2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repressor; NMR {Sulfolobus islandicus rod-shaped VIRUS1} Probab=28.76 E-value=12 Score=18.57 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=14.2 Q ss_pred ECHHHHHHHHHHHHHHHH Q ss_conf 375899999999721021 Q 537021.9.peg.8 19 FNDKKIQELIREELRGCM 36 (54) Q Consensus 19 fndkkiqelireelrgcm 36 (54) -||++||..|||.+.... T Consensus 34 ~N~~~i~~~I~EAi~EYL 51 (56) T 2kel_A 34 KNNLQLTQAIEEAIKEYL 51 (56) T ss_dssp HSCCCHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHH T ss_conf 364879999999999999 No 2 >1rgx_A Resistin, adipose; hormone, glucose uptake, resistin/FIZZ family, structural genomics, PSI, protein structure initiative; 1.79A {Mus musculus} SCOP: g.77.1.1 PDB: 1rfx_A* Probab=9.43 E-value=1.2e+02 Score=13.46 Aligned_cols=28 Identities=25% Similarity=0.033 Sum_probs=15.9 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 758999999997210212002000264211 Q 537021.9.peg.8 20 NDKKIQELIREELRGCMTIKSGILSNRSAK 49 (54) Q Consensus 20 ndkkiqelireelrgcmtiksgilsnrsak 49 (54) -||||+|....- ..-+++..-||-+|.+ T Consensus 32 v~~KIke~~~sl--~~~~~~~~~LsC~SV~ 59 (114) T 1rgx_A 32 IDKKIKQDFNSL--FPNAIKNIGLNCWTVS 59 (114) T ss_dssp HHHHHHHHHHHH--HHHHHTTEEEEEEEEE T ss_pred HHHHHHHHHHHH--CCCCCCCCCEEEEEEE T ss_conf 999999998740--6331000425889873 No 3 >1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1 Probab=9.07 E-value=57 Score=15.08 Aligned_cols=11 Identities=9% Similarity=0.075 Sum_probs=6.1 Q ss_pred HHHHHHHHHHC Q ss_conf 10212002000 Q 537021.9.peg.8 33 RGCMTIKSGIL 43 (54) Q Consensus 33 rgcmtiksgil 43 (54) .||+|.|.||- T Consensus 47 ~gC~Tl~~~Ie 57 (74) T 1th5_A 47 AVVRTVRIAVS 57 (74) T ss_dssp SSSSSHHHHHH T ss_pred CCCHHHHHHHH T ss_conf 76266999999 No 4 >1jp4_A 3'(2'),5'-bisphosphate nucleotidase; protein-product complex, sugar nucleotidase fold, hydrolase; HET: AMP; 1.69A {Rattus norvegicus} SCOP: e.7.1.1 PDB: 2wef_A* Probab=6.97 E-value=1.5e+02 Score=12.85 Aligned_cols=30 Identities=23% Similarity=0.197 Sum_probs=22.3 Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 7637589999999972102120020002642 Q 537021.9.peg.8 17 ITFNDKKIQELIREELRGCMTIKSGILSNRS 47 (54) Q Consensus 17 itfndkkiqelireelrgcmtiksgilsnrs 47 (54) .|--|+.+|++|++.|+.... ..+|++..+ T Consensus 47 VT~aD~~~e~~i~~~L~~~fP-~~~iigEE~ 76 (308) T 1jp4_A 47 QTKADRMVQMSICSSLSRKFP-KLTIIGEED 76 (308) T ss_dssp ECHHHHHHHHHHHHHHHHHCT-TSEEEESSC T ss_pred CCHHHHHHHHHHHHHHHHHCC-CCEEEECCC T ss_conf 569999999999999998888-986983255 No 5 >1n6j_G Calcineurin-binding protein cabin 1; MADS-BOX, protein-DNA complex, histone deacetylases, transcription/DNA complex; 2.20A {Homo sapiens} Probab=4.15 E-value=1.8e+02 Score=12.45 Aligned_cols=13 Identities=54% Similarity=0.626 Sum_probs=10.2 Q ss_pred HHHHHHCCCCCCC Q ss_conf 2002000264211 Q 537021.9.peg.8 37 TIKSGILSNRSAK 49 (54) Q Consensus 37 tiksgilsnrsak 49 (54) ..|+.|||..||. T Consensus 16 klk~~ils~qsaa 28 (35) T 1n6j_G 16 KLKSAILSAQSAA 28 (35) T ss_dssp HHHHHHHTTCSTT T ss_pred HHHHHHHHHHHHH T ss_conf 9999998516654 No 6 >2p3n_A Inositol-1-monophosphatase; tetramer, hydrolase; 2.20A {Thermotoga maritima MSB8} PDB: 2p3v_A* Probab=4.03 E-value=2.4e+02 Score=11.81 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=18.7 Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 76375899999999721021200200026 Q 537021.9.peg.8 17 ITFNDKKIQELIREELRGCMTIKSGILSN 45 (54) Q Consensus 17 itfndkkiqelireelrgcmtiksgilsn 45 (54) .|--|+.++++|++.|+-.. -..+|++. T Consensus 38 VT~~D~~~e~~i~~~L~~~~-P~~~i~~E 65 (256) T 2p3n_A 38 VTEIDREAQRMIVDEIRKFF-PDENIMAE 65 (256) T ss_dssp ECHHHHHHHHHHHHHHHHHS-TTCEEEES T ss_pred HHHHHHHHHHHHHHHHHHHC-CCCEEEEC T ss_conf 88999999999999999878-99809841 No 7 >1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3 Probab=3.50 E-value=2.7e+02 Score=11.55 Aligned_cols=13 Identities=46% Similarity=0.797 Sum_probs=9.6 Q ss_pred ECHHHHHHHHHHH Q ss_conf 3758999999997 Q 537021.9.peg.8 19 FNDKKIQELIREE 31 (54) Q Consensus 19 fndkkiqeliree 31 (54) ++.+++|||+++- T Consensus 6 ltK~~L~eLv~~i 18 (76) T 1h3o_B 6 LTKKKLQDLVREV 18 (76) T ss_dssp SCHHHHHHHHHHH T ss_pred CCHHHHHHHHHHC T ss_conf 6699999999961 No 8 >2beq_D E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1 PDB: 1zv7_A Probab=3.40 E-value=1.1e+02 Score=13.54 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=17.8 Q ss_pred CCCEEEEEEEEEECHHHHHHHHHH Q ss_conf 020257998576375899999999 Q 537021.9.peg.8 7 TSNINLTLTGITFNDKKIQELIRE 30 (54) Q Consensus 7 tsninltltgitfndkkiqelire 30 (54) -|.||.|.-.|+..-..|||.|+. T Consensus 5 ~~~~N~t~ldi~~Ei~~l~evik~ 28 (48) T 2beq_D 5 ISGINASVVNIQKEIDRLNEVAKN 28 (48) T ss_dssp CTTCCCCCCCCHHHHHHHHHHHTT T ss_pred HHHCCEEEEEHHHHHHHHHHHHHH T ss_conf 302326555659899999999999 No 9 >2w1o_A 60S acidic ribosomal protein P2; ribonucleoprotein, ribosome, translation, dimerization, phosphoprotein; NMR {Homo sapiens} Probab=3.36 E-value=2.2e+02 Score=12.00 Aligned_cols=13 Identities=31% Similarity=0.647 Sum_probs=6.8 Q ss_pred CHHHHHHHHHHHH Q ss_conf 7589999999972 Q 537021.9.peg.8 20 NDKKIQELIREEL 32 (54) Q Consensus 20 ndkkiqelireel 32 (54) +.|.|+|||.+-. T Consensus 48 ~GK~i~ElIa~G~ 60 (70) T 2w1o_A 48 NGKNIEDVIAQGI 60 (70) T ss_dssp HHSCHHHHHHHHS T ss_pred CCCCHHHHHHHHH T ss_conf 6998999999548 No 10 >1inp_A Inositol polyphosphate 1-phosphatase; hydrolase(phosphoric monoester); 2.30A {Bos taurus} SCOP: e.7.1.1 Probab=3.32 E-value=2.8e+02 Score=11.45 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=19.9 Q ss_pred EEECHHHHHHHHHHHHHHHHH-HHHHHCCCCCC Q ss_conf 763758999999997210212-00200026421 Q 537021.9.peg.8 17 ITFNDKKIQELIREELRGCMT-IKSGILSNRSA 48 (54) Q Consensus 17 itfndkkiqelireelrgcmt-iksgilsnrsa 48 (54) .|--|..+|++|+++|+.-.. +.-.|++.-++ T Consensus 50 VT~AD~~~q~~I~~~L~~~fP~~~~~IvGEE~~ 82 (400) T 1inp_A 50 KTLADVLVQEVIKENMENKFPGLGKKIFGEESN 82 (400) T ss_dssp HHHHHHHHHHHHHHHHHHHSTTGGGGEEESSCS T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEECCCCC T ss_conf 418999999999999998786999988815888 Done!