RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.885_1
         (54 letters)



>gnl|CDD|184095 PRK13504, PRK13504, sulfite reductase subunit beta; Provisional.
          Length = 569

 Score = 27.1 bits (61), Expect = 1.1
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 6   LTSNINLTLTGITFNDK-KIQELIRE 30
           LT+N NL +  +  +DK KI+ L+RE
Sbjct: 390 LTANQNLIIANVPPSDKAKIEALLRE 415


>gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional.
          Length = 1622

 Score = 24.7 bits (54), Expect = 5.9
 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)

Query: 21   DKKIQELIREELRGC-MTI 38
            D  IQ+ IREE + C M I
Sbjct: 1410 DALIQKTIREEFKSCTMLI 1428


>gnl|CDD|147970 pfam06097, DUF945, Bacterial protein of unknown function (DUF945). 
           This family consists of several hypothetical bacterial
           proteins of unknown function.
          Length = 460

 Score = 23.9 bits (52), Expect = 9.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 1   MDAGKLTSNINLTLTGITFND 21
              G+ T N+NL+L   T  D
Sbjct: 348 NAKGESTFNLNLSLADPTSAD 368


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.317    0.135    0.362 

Gapped
Lambda     K      H
   0.267   0.0706    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 793,736
Number of extensions: 33288
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 8
Length of query: 54
Length of database: 5,994,473
Length adjustment: 26
Effective length of query: 28
Effective length of database: 5,432,665
Effective search space: 152114620
Effective search space used: 152114620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.1 bits)