HHsearch alignment for GI: peg_887 and conserved domain: COG0541

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=91.03  E-value=1.2  Score=24.98  Aligned_cols=46  Identities=28%  Similarity=0.372  Sum_probs=35.6

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHC-----CCEEEECCHHHHHCCCCCCCCCCCHHHHC
Q ss_conf             5898499998798733449999999881-----98797500442116822242346768742
Q 537021.9.peg.8    7 STHTKAIFISGPTASGKSLCAVNLAHKF-----NGAIINADSMQVYDTLRILTSRPSDQDMQ   63 (133)
Q Consensus         7 ~~~~~ii~I~GpTasGKT~lai~LA~~~-----~~~IIs~DS~QvYk~l~IgTaKps~~e~~   63 (133)
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD-----------~~RpAA~eQL  147 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAAD-----------TYRPAAIEQL  147 (451)
T ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECC-----------CCCHHHHHHH
T ss_conf             89985899981567974868999999999749945898505-----------6786899999