HHsearch alignment for GI: peg_887 and conserved domain: COG0542
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=96.96 E-value=0.00093 Score=43.86 Aligned_cols=66 Identities=30% Similarity=0.392 Sum_probs=49.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC---CEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECC--------CCCCC
Q ss_conf 999987987334499999998819---8797500442116822242346768742340433144513--------76558
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFN---GAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPA--------QKSYS 80 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~---~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~--------~e~~s 80 (133)
T Consensus 523 sFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-MSEy------~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PyS 595 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALAEALFGDEQALIRID-MSEY------MEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYS 595 (786)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEC-HHHH------HHHHHHHHHHCCCCCCCEECCCCCHHHHHHCCCCE
T ss_conf 7886678865699999999999659974445545-6877------77877998727999872006554003766069986
Q ss_pred HHHH
Q ss_conf 9999
Q 537021.9.peg.8 81 TGKW 84 (133)
Q Consensus 81 v~~f 84 (133)
T Consensus 596 ViLl 599 (786)
T COG0542 596 VILL 599 (786)
T ss_pred EEEE
T ss_conf 8884