HHsearch alignment for GI: peg_887 and conserved domain: COG0542

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=96.96  E-value=0.00093  Score=43.86  Aligned_cols=66  Identities=30%  Similarity=0.392  Sum_probs=49.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCC---CEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECC--------CCCCC
Q ss_conf             999987987334499999998819---8797500442116822242346768742340433144513--------76558
Q 537021.9.peg.8   12 AIFISGPTASGKSLCAVNLAHKFN---GAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPA--------QKSYS   80 (133)
Q Consensus        12 ii~I~GpTasGKT~lai~LA~~~~---~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~--------~e~~s   80 (133)
T Consensus       523 sFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-MSEy------~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PyS  595 (786)
T COG0542         523 SFLFLGPTGVGKTELAKALAEALFGDEQALIRID-MSEY------MEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYS  595 (786)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEC-HHHH------HHHHHHHHHHCCCCCCCEECCCCCHHHHHHCCCCE
T ss_conf             7886678865699999999999659974445545-6877------77877998727999872006554003766069986


Q ss_pred             HHHH
Q ss_conf             9999
Q 537021.9.peg.8   81 TGKW   84 (133)
Q Consensus        81 v~~f   84 (133)
T Consensus       596 ViLl  599 (786)
T COG0542         596 VILL  599 (786)
T ss_pred             EEEE
T ss_conf             8884