HHsearch alignment for GI: peg_887 and conserved domain: COG1220
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=96.61 E-value=0.0022 Score=41.56 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=30.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCH
Q ss_conf 898499998798733449999999881987975004
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFNGAIINADS 43 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS 43 (133)
T Consensus 48 V~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEA 83 (444)
T COG1220 48 VTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEA 83 (444)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 575535888888876889999999984898378876