HHsearch alignment for GI: peg_887 and conserved domain: COG1220

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=96.61  E-value=0.0022  Score=41.56  Aligned_cols=36  Identities=31%  Similarity=0.438  Sum_probs=30.5

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCH
Q ss_conf             898499998798733449999999881987975004
Q 537021.9.peg.8    8 THTKAIFISGPTASGKSLCAVNLAHKFNGAIINADS   43 (133)
Q Consensus         8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS   43 (133)
T Consensus        48 V~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEA   83 (444)
T COG1220          48 VTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEA   83 (444)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf             575535888888876889999999984898378876