HHsearch alignment for GI: peg_887 and conserved domain: COG1643
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair].
Probab=90.86 E-value=0.15 Score=30.62 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=23.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC----CCEEEECCHHH
Q ss_conf 898499998798733449999999881----98797500442
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF----NGAIINADSMQ 45 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~----~~~IIs~DS~Q 45 (133)
T Consensus 63 ~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRR 104 (845)
T COG1643 63 EQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRR 104 (845)
T ss_pred HHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCHH
T ss_conf 869789986799887587889999960016687599658438