HHsearch alignment for GI: peg_887 and conserved domain: COG3451
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion].
Probab=90.38 E-value=0.29 Score=28.78 Aligned_cols=40 Identities=25% Similarity=0.278 Sum_probs=28.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH---HHCC-CEEEECCHHHHHC
Q ss_conf 98499998798733449999999---8819-8797500442116
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLA---HKFN-GAIINADSMQVYD 48 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA---~~~~-~~IIs~DS~QvYk 48 (133)
T Consensus 435 d~ghT~I~G~tGaGKTvLl~~lla~~~k~~~~~iv~fDk~~g~~ 478 (796)
T COG3451 435 DVGHTLIIGPTGAGKTVLLSFLLAQALKYGNPQIVAFDKDNGAY 478 (796)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf 76974998898887899999999999874598189984897357