HHsearch alignment for GI: peg_887 and conserved domain: COG3451

>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion].
Probab=90.38  E-value=0.29  Score=28.78  Aligned_cols=40  Identities=25%  Similarity=0.278  Sum_probs=28.6

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHH---HHCC-CEEEECCHHHHHC
Q ss_conf             98499998798733449999999---8819-8797500442116
Q 537021.9.peg.8    9 HTKAIFISGPTASGKSLCAVNLA---HKFN-GAIINADSMQVYD   48 (133)
Q Consensus         9 ~~~ii~I~GpTasGKT~lai~LA---~~~~-~~IIs~DS~QvYk   48 (133)
T Consensus       435 d~ghT~I~G~tGaGKTvLl~~lla~~~k~~~~~iv~fDk~~g~~  478 (796)
T COG3451         435 DVGHTLIIGPTGAGKTVLLSFLLAQALKYGNPQIVAFDKDNGAY  478 (796)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf             76974998898887899999999999874598189984897357