HHsearch alignment for GI: peg_887 and conserved domain: COG4962

>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].

Probab=92.89  E-value=0.21  Score=29.62  Aligned_cols=68  Identities=22%  Similarity=0.262  Sum_probs=44.7

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECC-C----CCCCHHHHH
Q ss_conf             49999879873344999999988198797500442116822242346768742340433144513-7----655899999
Q 537021.9.peg.8   11 KAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPA-Q----KSYSTGKWL   85 (133)
Q Consensus        11 ~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~-~----e~~sv~~f~   85 (133)
T Consensus       174 ~NILisGGTGSGKTTlLNal~~~i~~-----------~e-RvItiEDtaELql~~ph~vrL~TR~~n~Eg~gevtm~dLv  241 (355)
T COG4962         174 CNILISGGTGSGKTTLLNALSGFIDS-----------DE-RVITIEDTAELQLAHPHVVRLETRPPNVEGTGEVTMRDLV  241 (355)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCCCC-----------CC-EEEEEEEHHHHCCCCCCEEEEEECCCCCCCCCEEEHHHHH
T ss_conf             15999678788799999999715797-----------65-0899812366446998557886348877776558899999


Q ss_pred             HHHHH
Q ss_conf             99999
Q 537021.9.peg.8   86 RYAIK   90 (133)
Q Consensus        86 ~~a~~   90 (133)
T Consensus       242 kn~LR  246 (355)
T COG4962         242 KNALR  246 (355)
T ss_pred             HHHHH
T ss_conf             98753