HHsearch alignment for GI: peg_887 and conserved domain: PRK04195
>PRK04195 replication factor C large subunit; Provisional.
Probab=97.03 E-value=0.00093 Score=43.87 Aligned_cols=33 Identities=30% Similarity=0.489 Sum_probs=29.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEC
Q ss_conf 984999987987334499999998819879750
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFNGAIINA 41 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~ 41 (133)
T Consensus 39 ~~k~lLL~GPpGvGKTT~a~~lAk~~g~~viEl 71 (403)
T PRK04195 39 PKKALLLYGPPGVGKTSLAHALANDYGWEVIEL 71 (403)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 574699889399879999999999849985997