HHsearch alignment for GI: peg_887 and conserved domain: PRK05541

Probab=96.78  E-value=0.002  Score=41.87  Aligned_cols=42  Identities=26%  Similarity=0.425  Sum_probs=35.0

Q ss_pred             EEECCCCCEEEEECCCCCCHHHHHHHHHHHC-----CCEEEECCHHH
Q ss_conf             1005898499998798733449999999881-----98797500442
Q 537021.9.peg.8    4 MFLSTHTKAIFISGPTASGKSLCAVNLAHKF-----NGAIINADSMQ   45 (133)
Q Consensus         4 ~~~~~~~~ii~I~GpTasGKT~lai~LA~~~-----~~~IIs~DS~Q   45 (133)
T Consensus         1 ~~~~~kg~viW~TGLsGSGKTTiA~~l~~~L~~~g~~~~~LDGD~lR   47 (176)
T PRK05541          1 MQMKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELR   47 (176)
T ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHH
T ss_conf             98788867999789999989999999999999759977998868999