HHsearch alignment for GI: peg_887 and conserved domain: PRK08084
>PRK08084 DNA replication initiation factor; Provisional.
Probab=95.50 E-value=0.043 Score=33.79 Aligned_cols=91 Identities=9% Similarity=0.056 Sum_probs=47.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC-----CEEEECCHHHHHCCCCCCCCCCCHHHHCCCEE-EECCEECCCCCCCH
Q ss_conf 8984999987987334499999998819-----87975004421168222423467687423404-33144513765589
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKFN-----GAIINADSMQVYDTLRILTSRPSDQDMQSIPH-YLYGYVPAQKSYST 81 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~~-----~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H-~lid~~~~~e~~sv 81 (133)
T Consensus 43 ~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~---------~~~-~~~~~l~~l~~~dll~iDDi~~i~g~ 112 (235)
T PRK08084 43 EHSGYIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDK---------RAW-FVPEVLEGMEQLSLVCIDNIECIAGD 112 (235)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHH---------HHH-HHHHHHHHHHHCCEEEEECHHHHCCC
T ss_conf 89876999899998889999999999970798579987798---------665-17999987641898998274554699
Q ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHCCCEEEEECCC
Q ss_conf 9999999999999984100000133259855998893
Q 537021.9.peg.8 82 GKWLRYAIKKIAEVQKTVFTYNSRWDRSLFSCINRST 118 (133)
Q Consensus 82 ~~f~~~a~~~i~~i~~~~~~~~~~~~r~~~piivGGT 118 (133)
T Consensus 113 ~~~ee~lF~l~N~~~~----------~g~~~ll~ts~ 139 (235)
T PRK08084 113 ELWEMAIFDLYNRILE----------SGKTRLLITGD 139 (235)
T ss_pred HHHHHHHHHHHHHHHH----------HCCCEEEEECC
T ss_conf 7899999999999998----------48966999679