HHsearch alignment for GI: peg_887 and conserved domain: PRK08084

>PRK08084 DNA replication initiation factor; Provisional.
Probab=95.50  E-value=0.043  Score=33.79  Aligned_cols=91  Identities=9%  Similarity=0.056  Sum_probs=47.0

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCC-----CEEEECCHHHHHCCCCCCCCCCCHHHHCCCEE-EECCEECCCCCCCH
Q ss_conf             8984999987987334499999998819-----87975004421168222423467687423404-33144513765589
Q 537021.9.peg.8    8 THTKAIFISGPTASGKSLCAVNLAHKFN-----GAIINADSMQVYDTLRILTSRPSDQDMQSIPH-YLYGYVPAQKSYST   81 (133)
Q Consensus         8 ~~~~ii~I~GpTasGKT~lai~LA~~~~-----~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H-~lid~~~~~e~~sv   81 (133)
T Consensus        43 ~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~---------~~~-~~~~~l~~l~~~dll~iDDi~~i~g~  112 (235)
T PRK08084         43 EHSGYIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDK---------RAW-FVPEVLEGMEQLSLVCIDNIECIAGD  112 (235)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHH---------HHH-HHHHHHHHHHHCCEEEEECHHHHCCC
T ss_conf             89876999899998889999999999970798579987798---------665-17999987641898998274554699


Q ss_pred             HHHHHHHHHHHHHHHHHHCHHHHHHHCCCEEEEECCC
Q ss_conf             9999999999999984100000133259855998893
Q 537021.9.peg.8   82 GKWLRYAIKKIAEVQKTVFTYNSRWDRSLFSCINRST  118 (133)
Q Consensus        82 ~~f~~~a~~~i~~i~~~~~~~~~~~~r~~~piivGGT  118 (133)
T Consensus       113 ~~~ee~lF~l~N~~~~----------~g~~~ll~ts~  139 (235)
T PRK08084        113 ELWEMAIFDLYNRILE----------SGKTRLLITGD  139 (235)
T ss_pred             HHHHHHHHHHHHHHHH----------HCCCEEEEECC
T ss_conf             7899999999999998----------48966999679