HHsearch alignment for GI: peg_887 and conserved domain: PRK11131

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional.
Probab=90.18  E-value=0.18  Score=30.06  Aligned_cols=24  Identities=21%  Similarity=0.415  Sum_probs=18.1

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             898499998798733449999999
Q 537021.9.peg.8    8 THTKAIFISGPTASGKSLCAVNLA   31 (133)
Q Consensus         8 ~~~~ii~I~GpTasGKT~lai~LA   31 (133)
T Consensus        87 ~~nqVvii~GeTGsGKTTQiPq~~  110 (1295)
T PRK11131         87 RDHQVVIVAGETGSGKTTQLPKIC  110 (1295)
T ss_pred             HHCCEEEEECCCCCCHHHHHHHHH
T ss_conf             979969997689998788999999