HHsearch alignment for GI: peg_887 and conserved domain: PRK12338

Probab=97.00  E-value=0.00095  Score=43.82  Aligned_cols=108  Identities=17%  Similarity=0.105  Sum_probs=63.4

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCC-EEEECCHH-HHHCCCCCCCCCCCHHHHCCCEEEECCEEC-C-------CC
Q ss_conf             89849999879873344999999988198-79750044-211682224234676874234043314451-3-------76
Q 537021.9.peg.8    8 THTKAIFISGPTASGKSLCAVNLAHKFNG-AIINADSM-QVYDTLRILTSRPSDQDMQSIPHYLYGYVP-A-------QK   77 (133)
Q Consensus         8 ~~~~ii~I~GpTasGKT~lai~LA~~~~~-~IIs~DS~-QvYk~l~IgTaKps~~e~~~v~H~lid~~~-~-------~e   77 (133)
T Consensus         2 r~PliILiGGtSGvGKSTlAseLAsRLgI~tvIsTDsIRevmR~~is~e~~P~L~~--S-TY~A~~~Lr~~~~~~~~~~~   78 (320)
T PRK12338          2 RKPYVILIGSASGIGKSTIASEVARRLNIKHLIETDFIREVVRGIIGKEYAPALHM--S-SYNAYTALRDKDHFVPKRFE   78 (320)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHCCHHHCCHHHH--H-HHHHHHHHCCCCCCCCCCHH
T ss_conf             97679997068887688899999985198711033479999998338041534554--2-02678872674235774116


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCEEEEECCCHHHH
Q ss_conf             558999999999999999841000001332598559988930899
Q 537021.9.peg.8   78 SYSTGKWLRYAIKKIAEVQKTVFTYNSRWDRSLFSCINRSTLYYA  122 (133)
Q Consensus        78 ~~sv~~f~~~a~~~i~~i~~~~~~~~~~~~r~~~piivGGTglY~  122 (133)
T Consensus        79 ~~vi~Gfe~q~e~V~~~le~v----I~r~~~~~~sivIEGVHLvP  119 (320)
T PRK12338         79 ELVIAGFEEHASFVIPAIEKV----IKRAVTDADDIVIEGVHLVP  119 (320)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHCCCCEEEEEEEECH
T ss_conf             789999999989999999999----99998648867998453055