HHsearch alignment for GI: peg_887 and conserved domain: PRK12339

Probab=97.50  E-value=0.00014  Score=48.79  Aligned_cols=103  Identities=12%  Similarity=0.102  Sum_probs=64.5

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCC-EEEECCHH-HHHCCCCCCCCCCCHHHHCCCEEEECCE-ECCCCCCCHHHHH
Q ss_conf             9849999879873344999999988198-79750044-2116822242346768742340433144-5137655899999
Q 537021.9.peg.8    9 HTKAIFISGPTASGKSLCAVNLAHKFNG-AIINADSM-QVYDTLRILTSRPSDQDMQSIPHYLYGY-VPAQKSYSTGKWL   85 (133)
Q Consensus         9 ~~~ii~I~GpTasGKT~lai~LA~~~~~-~IIs~DS~-QvYk~l~IgTaKps~~e~~~v~H~lid~-~~~~e~~sv~~f~   85 (133)
T Consensus         2 ~~~iiligG~sGvGKStla~~lA~rlgi~~visTD~IRevlR~~i--~~eP~L~~---Ssy~A~~~~~~~~~~~ii~Gf~   76 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYV--DDEPVLAK---SVYDAWEFYGSMTDENIVKGYL   76 (197)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHC--CCCCCHHH---HHHHHHHHCCCCCHHHHHHHHH
T ss_conf             747999857998878999999999749975534347999999866--88740033---0467988708965278999999


Q ss_pred             HHHHHHHHHHHHHHCHHHHHHHCCCEEEEECCCHH
Q ss_conf             99999999998410000013325985599889308
Q 537021.9.peg.8   86 RYAIKKIAEVQKTVFTYNSRWDRSLFSCINRSTLY  120 (133)
Q Consensus        86 ~~a~~~i~~i~~~~~~~~~~~~r~~~piivGGTgl  120 (133)
T Consensus        77 ~q~~~V~~gi~avi----~Ra~~eg~slIIEGVHl  107 (197)
T PRK12339         77 DQARAIMPGINRVI----RRALLNGEDLVIESLYF  107 (197)
T ss_pred             HHHHHHHHHHHHHH----HHHHHCCCCEEEEEEEE
T ss_conf             99999999999999----99997399779985211