HHsearch alignment for GI: peg_887 and conserved domain: PRK12724

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.17  E-value=0.00054  Score=45.27  Aligned_cols=39  Identities=31%  Similarity=0.601  Sum_probs=30.7

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHC------CCEEEECCHHHH
Q ss_conf             898499998798733449999999881------987975004421
Q 537021.9.peg.8    8 THTKAIFISGPTASGKSLCAVNLAHKF------NGAIINADSMQV   46 (133)
Q Consensus         8 ~~~~ii~I~GpTasGKT~lai~LA~~~------~~~IIs~DS~Qv   46 (133)
T Consensus       221 ~~~kvi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRI  265 (432)
T PRK12724        221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI  265 (432)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCH
T ss_conf             776299998999988899999999999997499279995266537