HHsearch alignment for GI: peg_887 and conserved domain: PRK12724
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.17 E-value=0.00054 Score=45.27 Aligned_cols=39 Identities=31% Similarity=0.601 Sum_probs=30.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC------CCEEEECCHHHH
Q ss_conf 898499998798733449999999881------987975004421
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF------NGAIINADSMQV 46 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~------~~~IIs~DS~Qv 46 (133)
T Consensus 221 ~~~kvi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRI 265 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCH
T ss_conf 776299998999988899999999999997499279995266537