HHsearch alignment for GI: peg_887 and conserved domain: PRK12726
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional.
Probab=96.43 E-value=0.0045 Score=39.76 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=30.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC-----CCEEEECCHHH
Q ss_conf 898499998798733449999999881-----98797500442
Q 537021.9.peg.8 8 THTKAIFISGPTASGKSLCAVNLAHKF-----NGAIINADSMQ 45 (133)
Q Consensus 8 ~~~~ii~I~GpTasGKT~lai~LA~~~-----~~~IIs~DS~Q 45 (133)
T Consensus 204 ~~g~VIaLVGvnGvGKTTTiAKLA~~l~~~gkkV~LVAaDTFR 246 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFR 246 (407)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 3690899989998978999999999999779917999706677