HHsearch alignment for GI: peg_887 and conserved domain: PRK12727
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional.
Probab=95.98 E-value=0.007 Score=38.58 Aligned_cols=38 Identities=29% Similarity=0.492 Sum_probs=29.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH----CC---CEEEECCHHHH
Q ss_conf 9849999879873344999999988----19---87975004421
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHK----FN---GAIINADSMQV 46 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~----~~---~~IIs~DS~Qv 46 (133)
T Consensus 347 ~gGv~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRi 391 (557)
T PRK12727 347 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRV 391 (557)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCH
T ss_conf 076478743777673117999999999973998189997266408