HHsearch alignment for GI: peg_887 and conserved domain: PRK12727

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional.
Probab=95.98  E-value=0.007  Score=38.58  Aligned_cols=38  Identities=29%  Similarity=0.492  Sum_probs=29.5

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH----CC---CEEEECCHHHH
Q ss_conf             9849999879873344999999988----19---87975004421
Q 537021.9.peg.8    9 HTKAIFISGPTASGKSLCAVNLAHK----FN---GAIINADSMQV   46 (133)
Q Consensus         9 ~~~ii~I~GpTasGKT~lai~LA~~----~~---~~IIs~DS~Qv   46 (133)
T Consensus       347 ~gGv~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRi  391 (557)
T PRK12727        347 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRV  391 (557)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCH
T ss_conf             076478743777673117999999999973998189997266408