HHsearch alignment for GI: peg_887 and conserved domain: PRK13948
>PRK13948 shikimate kinase; Provisional.
Probab=97.55 E-value=0.00021 Score=47.74 Aligned_cols=78 Identities=10% Similarity=0.075 Sum_probs=57.9
Q ss_pred CCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCC
Q ss_conf 92110058984999987987334499999998819879750044211682224234676874234043314451376558
Q 537021.9.peg.8 1 MMMMFLSTHTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYS 80 (133)
Q Consensus 1 ~~~~~~~~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~s 80 (133)
T Consensus 1 ~~~~~~p~~~~~IvLIG~mGsGKStiGk~LA~~l~~~fiD~D~~I--------------e~-----~~g~sI~eIF~~~G 61 (182)
T PRK13948 1 MARLEVPRPATFVALAGFMGTGKSRIGWELSRALALHFVDTDKLI--------------TR-----VVGKSIPEVFAQEG 61 (182)
T ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHH--------------HH-----HHCCCHHHHHHHHC
T ss_conf 986657999981898899999889999999999695988884999--------------99-----88939999999848
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999984
Q 537021.9.peg.8 81 TGKWLRYAIKKIAEVQK 97 (133)
Q Consensus 81 v~~f~~~a~~~i~~i~~ 97 (133)
T Consensus 62 E~~FR~~E~~~l~~l~~ 78 (182)
T PRK13948 62 EEYFRACEKEVVRRVTR 78 (182)
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 99999999999999974