HHsearch alignment for GI: peg_887 and conserved domain: TIGR00174
>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=100.00 E-value=0 Score=303.11 Aligned_cols=109 Identities=36% Similarity=0.503 Sum_probs=105.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHHHHHHH
Q ss_conf 99998798733449999999881987975004421168222423467687423404331445137655899999999999
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLRYAIKK 91 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~~a~~~ 91 (133)
T Consensus 1 vi~i~GpTAvGKs~L~i~La~~lnaEiI~~DS~qiYK~~dIgtaKp~~~e~~~ipH~l~Dildp~e~y~~~~F~~~~~~~ 80 (307)
T TIGR00174 1 VIVIMGPTAVGKSNLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQERKGIPHHLIDILDPSESYSAADFQTQALNA 80 (307)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCEEEEECCCHHHHCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 96774088554778999988768957874350232237875357889687534981585134712003708899999999
Q ss_pred HHHHHHHHCHHHHHHHCCCEEEEECCCHHHHHHHHCCCC
Q ss_conf 999984100000133259855998893089999841843
Q 537021.9.peg.8 92 IAEVQKTVFTYNSRWDRSLFSCINRSTLYYARNTYCNKR 130 (133)
Q Consensus 92 i~~i~~~~~~~~~~~~r~~~piivGGTglY~~al~~~~~ 130 (133)
T Consensus 81 ~~~i~~----------~Gkipl~VGGT~lY~k~l~~gl~ 109 (307)
T TIGR00174 81 IADITA----------RGKIPLLVGGTGLYLKALLEGLS 109 (307)
T ss_pred HHHHHH----------CCCCEEEECCHHHHHHHHHHCCC
T ss_conf 999985----------69834886857889999971477