HHsearch alignment for GI: peg_887 and conserved domain: TIGR00174

>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=100.00  E-value=0  Score=303.11  Aligned_cols=109  Identities=36%  Similarity=0.503  Sum_probs=105.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHHHHHHHHHH
Q ss_conf             99998798733449999999881987975004421168222423467687423404331445137655899999999999
Q 537021.9.peg.8   12 AIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGKWLRYAIKK   91 (133)
Q Consensus        12 ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~f~~~a~~~   91 (133)
T Consensus         1 vi~i~GpTAvGKs~L~i~La~~lnaEiI~~DS~qiYK~~dIgtaKp~~~e~~~ipH~l~Dildp~e~y~~~~F~~~~~~~   80 (307)
T TIGR00174         1 VIVIMGPTAVGKSNLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQERKGIPHHLIDILDPSESYSAADFQTQALNA   80 (307)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHCCEEEEECCCHHHHCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf             96774088554778999988768957874350232237875357889687534981585134712003708899999999


Q ss_pred             HHHHHHHHCHHHHHHHCCCEEEEECCCHHHHHHHHCCCC
Q ss_conf             999984100000133259855998893089999841843
Q 537021.9.peg.8   92 IAEVQKTVFTYNSRWDRSLFSCINRSTLYYARNTYCNKR  130 (133)
Q Consensus        92 i~~i~~~~~~~~~~~~r~~~piivGGTglY~~al~~~~~  130 (133)
T Consensus        81 ~~~i~~----------~Gkipl~VGGT~lY~k~l~~gl~  109 (307)
T TIGR00174        81 IADITA----------RGKIPLLVGGTGLYLKALLEGLS  109 (307)
T ss_pred             HHHHHH----------CCCCEEEECCHHHHHHHHHHCCC
T ss_conf             999985----------69834886857889999971477