HHsearch alignment for GI: peg_887 and conserved domain: TIGR00602

>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=93.42  E-value=0.071  Score=32.49  Aligned_cols=97  Identities=11%  Similarity=0.157  Sum_probs=59.8

Q ss_pred             CCC---EEEEECCCCCCHHHHHHHHHHHCC-------------------------CEEEECC----HHHHHCCCCCCCCC
Q ss_conf             984---999987987334499999998819-------------------------8797500----44211682224234
Q 537021.9.peg.8    9 HTK---AIFISGPTASGKSLCAVNLAHKFN-------------------------GAIINAD----SMQVYDTLRILTSR   56 (133)
Q Consensus         9 ~~~---ii~I~GpTasGKT~lai~LA~~~~-------------------------~~IIs~D----S~QvYk~l~IgTaK   56 (133)
T Consensus       114 ~~rGGs~LLi~GPsGCgKsT~~k~LsKelg~~~~ew~Np~~~~~~~n~~k~~~~~~~~f~~~PY~sq~e~f~efll~a~k  193 (670)
T TIGR00602       114 KKRGGSILLITGPSGCGKSTTIKILSKELGIKVQEWLNPVLLKEQKNDEKDTLSLESKFSRFPYLSQIEVFSEFLLRATK  193 (670)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHH
T ss_conf             66775378841755884478999998886445655407878888851244442125402216763145546787642123


Q ss_pred             CCHHHHC------CCEEEECCEECCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCEE-EE
Q ss_conf             6768742------3404331445137655899999999999999984100000133259855-99
Q 537021.9.peg.8   57 PSDQDMQ------SIPHYLYGYVPAQKSYSTGKWLRYAIKKIAEVQKTVFTYNSRWDRSLFS-CI  114 (133)
Q Consensus        57 ps~~e~~------~v~H~lid~~~~~e~~sv~~f~~~a~~~i~~i~~~~~~~~~~~~r~~~p-ii  114 (133)
T Consensus       194 Y~~lQ~lG~~~~~~kk~Il~e~lPhln~F~~d~~rr~~~~vlr~~~---------~~~g~~pPlv  249 (670)
T TIGR00602       194 YNKLQKLGDDLQTDKKLILVEDLPHLNKFYRDLDRRALREVLRTKY---------VSEGRLPPLV  249 (670)
T ss_pred             HHHHHHCCCCCCCCCCEEEECCCCCHHHHCCCHHHHHHHHHHHHHH---------HCCCCCCCEE
T ss_conf             4666421411024754577213764022136612689999999986---------2378988358