HHsearch alignment for GI: peg_887 and conserved domain: TIGR00618
>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=95.13 E-value=0.02 Score=35.88 Aligned_cols=41 Identities=15% Similarity=0.043 Sum_probs=27.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC---CEEEECCHHHHHCC
Q ss_conf 984999987987334499999998819---87975004421168
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHKFN---GAIINADSMQVYDT 49 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~~~---~~IIs~DS~QvYk~ 49 (133)
T Consensus 29 sl~~f~i~G~tGAGKtsLldAI~yALYGkP~~~~s~~~~~~~~~ 72 (1063)
T TIGR00618 29 SLKLFVICGKTGAGKTSLLDAITYALYGKPVPRESEVVASKNSL 72 (1063)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 25736777889983545999999987288877514678887542