HHsearch alignment for GI: peg_887 and conserved domain: TIGR01420
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.17 E-value=0.0025 Score=41.26 Aligned_cols=78 Identities=17% Similarity=0.142 Sum_probs=41.4
Q ss_pred EEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHH
Q ss_conf 10058984999987987334499999998819879750044211682224234676874234043314451376558999
Q 537021.9.peg.8 4 MFLSTHTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGK 83 (133)
Q Consensus 4 ~~~~~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~ 83 (133)
T Consensus 121 ~~a~~~~GLiLVTGPTGSGKSTTlAsmIDyIN~~----------~~~HIiTIEDPIEyvh~~~~sli~QREvG--~DT~s 188 (350)
T TIGR01420 121 ELAERPRGLILVTGPTGSGKSTTLASMIDYINKN----------KAGHIITIEDPIEYVHKNKRSLINQREVG--LDTLS 188 (350)
T ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCC----------CCCCCEEEECCEEEEECCCEEEEECCCCC--CCHHH
T ss_conf 9983669938987688986789999999787403----------88882563177314104770245436246--75457
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q 537021.9.peg.8 84 WLRYAIKKIA 93 (133)
Q Consensus 84 f~~~a~~~i~ 93 (133)
T Consensus 189 F~~ALraALR 198 (350)
T TIGR01420 189 FANALRAALR 198 (350)
T ss_pred HHHHHHHHHC
T ss_conf 9999768410