HHsearch alignment for GI: peg_887 and conserved domain: TIGR01420

>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.17  E-value=0.0025  Score=41.26  Aligned_cols=78  Identities=17%  Similarity=0.142  Sum_probs=41.4

Q ss_pred             EEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCHHHHCCCEEEECCEECCCCCCCHHH
Q ss_conf             10058984999987987334499999998819879750044211682224234676874234043314451376558999
Q 537021.9.peg.8    4 MFLSTHTKAIFISGPTASGKSLCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLYGYVPAQKSYSTGK   83 (133)
Q Consensus         4 ~~~~~~~~ii~I~GpTasGKT~lai~LA~~~~~~IIs~DS~QvYk~l~IgTaKps~~e~~~v~H~lid~~~~~e~~sv~~   83 (133)
T Consensus       121 ~~a~~~~GLiLVTGPTGSGKSTTlAsmIDyIN~~----------~~~HIiTIEDPIEyvh~~~~sli~QREvG--~DT~s  188 (350)
T TIGR01420       121 ELAERPRGLILVTGPTGSGKSTTLASMIDYINKN----------KAGHIITIEDPIEYVHKNKRSLINQREVG--LDTLS  188 (350)
T ss_pred             HHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCC----------CCCCCEEEECCEEEEECCCEEEEECCCCC--CCHHH
T ss_conf             9983669938987688986789999999787403----------88882563177314104770245436246--75457


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q 537021.9.peg.8   84 WLRYAIKKIA   93 (133)
Q Consensus        84 f~~~a~~~i~   93 (133)
T Consensus       189 F~~ALraALR  198 (350)
T TIGR01420       189 FANALRAALR  198 (350)
T ss_pred             HHHHHHHHHC
T ss_conf             9999768410