HHsearch alignment for GI: peg_887 and conserved domain: TIGR01587
>TIGR01587 cas3_core CRISPR-associated helicase Cas3; InterPro: IPR006474 This entry represents a highly conserved core region of the Cas3 sequences. The proteins are found in association with CRISPR repeat elements in a broad range of bacteria and Archaea . Cas3 appears to be a helicase, containing a DEAD/DEAH box region and conserved C-terminal domain. Some but not all members have an N-terminal HD domain region (IPR006674 from INTERPRO), these sequences are not included within this group..
Probab=94.14 E-value=0.038 Score=34.13 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9999879873344999999988
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHK 33 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~ 33 (133)
T Consensus 1 ~~v~~APTG~GKTe~aL~~A~~ 22 (424)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALK 22 (424)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
T ss_conf 9688617899878999999986