HHsearch alignment for GI: peg_887 and conserved domain: cd00983

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.

Probab=94.42  E-value=0.077  Score=32.29  Aligned_cols=39  Identities=28%  Similarity=0.433  Sum_probs=29.8

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHH---HHCCCEEEECCHHHH
Q ss_conf             898499998798733449999999---881987975004421
Q 537021.9.peg.8    8 THTKAIFISGPTASGKSLCAVNLA---HKFNGAIINADSMQV   46 (133)
Q Consensus         8 ~~~~ii~I~GpTasGKT~lai~LA---~~~~~~IIs~DS~Qv   46 (133)
T Consensus        53 P~GRivei~G~essGKTtlal~~ia~aQk~gg~~~~iDaE~a   94 (325)
T cd00983          53 PKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHA   94 (325)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHC
T ss_conf             688089998898777999999999998735983999962542