HHsearch alignment for GI: peg_887 and conserved domain: cd01120
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.57 E-value=0.13 Score=30.94 Aligned_cols=31 Identities=39% Similarity=0.650 Sum_probs=23.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC---CCEEEECC
Q ss_conf 99998798733449999999881---98797500
Q 537021.9.peg.8 12 AIFISGPTASGKSLCAVNLAHKF---NGAIINAD 42 (133)
Q Consensus 12 ii~I~GpTasGKT~lai~LA~~~---~~~IIs~D 42 (133)
T Consensus 1 ~~li~g~~g~GKttl~~~~~~~~~~~~~~~~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9899989999899999999999876399799998