HHsearch alignment for GI: peg_887 and conserved domain: cd01124

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.

Probab=90.40  E-value=0.23  Score=29.44  Aligned_cols=36  Identities=17%  Similarity=0.302  Sum_probs=23.5

Q ss_pred             EEEECCCCCCHHHHHHHHHHH-----CCCEEEEC--CHHHHHC
Q ss_conf             999879873344999999988-----19879750--0442116
Q 537021.9.peg.8   13 IFISGPTASGKSLCAVNLAHK-----FNGAIINA--DSMQVYD   48 (133)
Q Consensus        13 i~I~GpTasGKT~lai~LA~~-----~~~~IIs~--DS~QvYk   48 (133)
T Consensus         2 tLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~eE~~~~l~~   44 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIE   44 (187)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHH
T ss_conf             1587689999999999999999876997899995079999999