HHsearch alignment for GI: peg_887 and conserved domain: cd01126
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.94 E-value=0.21 Score=29.70 Aligned_cols=30 Identities=23% Similarity=0.479 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHH-HHHHHHHHCCCEEEECC
Q ss_conf 9998798733449-99999988198797500
Q 537021.9.peg.8 13 IFISGPTASGKSL-CAVNLAHKFNGAIINAD 42 (133)
Q Consensus 13 i~I~GpTasGKT~-lai~LA~~~~~~IIs~D 42 (133)
T Consensus 2 ~lvig~tGsGKt~~~vip~ll~~~~s~vv~D 32 (384)
T cd01126 2 VLVFAPTRSGKGVGFVIPNLLTWPGSVVVLD 32 (384)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 7998899997318999999981899889994