HHsearch alignment for GI: peg_887 and conserved domain: cd01393
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=92.90 E-value=0.13 Score=30.82 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9849999879873344999999988
Q 537021.9.peg.8 9 HTKAIFISGPTASGKSLCAVNLAHK 33 (133)
Q Consensus 9 ~~~ii~I~GpTasGKT~lai~LA~~ 33 (133)
T Consensus 18 ~G~ItEi~G~~gsGKT~l~lqla~~ 42 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8839999999999899999999999