HHsearch alignment for GI: peg_887 and conserved domain: cd01394

>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

Probab=90.36  E-value=0.54  Score=27.18  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=26.7

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH---CCCEEEECCH
Q ss_conf             9849999879873344999999988---1987975004
Q 537021.9.peg.8    9 HTKAIFISGPTASGKSLCAVNLAHK---FNGAIINADS   43 (133)
Q Consensus         9 ~~~ii~I~GpTasGKT~lai~LA~~---~~~~IIs~DS   43 (133)
T Consensus        18 ~G~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~Yidt   55 (218)
T cd01394          18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT   55 (218)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             88799998999984999999999998636986999966